View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11742_low_1 (Length: 547)

Name: NF11742_low_1
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11742_low_1
NF11742_low_1
[»] chr4 (1 HSPs)
chr4 (18-534)||(35773097-35773645)
[»] chr2 (1 HSPs)
chr2 (267-316)||(33762708-33762757)
[»] chr8 (1 HSPs)
chr8 (272-310)||(20702020-20702058)
[»] chr6 (3 HSPs)
chr6 (139-183)||(13364722-13364766)
chr6 (139-183)||(7996395-7996439)
chr6 (139-183)||(8022362-8022406)
[»] chr1 (2 HSPs)
chr1 (118-183)||(40181848-40181913)
chr1 (139-183)||(12443477-12443521)
[»] chr7 (1 HSPs)
chr7 (151-183)||(23128678-23128710)
[»] chr3 (1 HSPs)
chr3 (139-183)||(8383255-8383299)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 35773097 - 35773645
Alignment:
Q  18 taataaataattgaacattgacactaatcatatcttctctatgttccttttttgaatggtctgatctttatagtataattttgttaatcatatgcatagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  35773097 taataaataattgaacattgacactaatcatatcttctctatgttccttttttgaatggtctgatctttatagtttaattctgttaatcatatgcatagc 35773196  T
Q  118 tatgaagcactgatagggtcaccgacac--------------------agcttataattttagaaaaccatataattcagtgtaatactaattatatgtg 197  Q
    |||||||||| |||| | ||||||||||                    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35773197 tatgaagcacagatacgatcaccgacactgatactgacccgccgacacagcttataattttagaaaaccatataattcagtataatactaattatatgtg 35773296  T
Q  198 t----------ttcattggatagtcattcgaccat--gtttttatattaaagaaatattaacannnnnnnattgtattggttttggagcttgatgattgg 285  Q
    |          ||||||| ||||||||| ||||||  |||||||||||||||||| |||||||       | | ||||||||||||||||||||||||||    
T  35773297 tcgatccgtgtttcattgcatagtcattagaccatatgtttttatattaaagaaaaattaacatttttttactatattggttttggagcttgatgattgg 35773396  T
Q  286 gttttgtgccgaatatacaagaaaagcaacagtagcacgatgccgaggccactcctaatggatcaatatgatgatcaaacctataatatgcaacaaaact 385  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35773397 gttttgtgccgaatatacaagaaaagcaacagtagcaacatgccaaggccactcctaatggatcaatatgatgatcaaacctataatatgcaacaaaact 35773496  T
Q  386 ccaaacattcatcttcaagaagcacaagttatggacttgaaaatgatgacaatttctttgatggaatcttagcatctgatcacggaatgcaaaatggttg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35773497 ccaaacattcatcttcaagaagcacaagttatggacttgaaaatgatgacaatttctttgatggaatcttagcatctgatcacggaatgcaaaatggttg 35773596  T
Q  486 tgacataaactcaaagggtgataacaataataatgaatcattattccct 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35773597 tgacataaactcaaagggtgataacaataataatgaatcattattccct 35773645  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 33762708 - 33762757
Alignment:
Q  267 tttggagcttgatgattgggttttgtgccgaatatacaagaaaagcaaca 316  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  33762708 tttgtagcttgatgattgggttttgtgccggatctacaagaaaagcaaca 33762757  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 20702020 - 20702058
Alignment:
Q  272 agcttgatgattgggttttgtgccgaatatacaagaaaa 310  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  20702020 agcttgatgattgggttttgtgtcgaatatacaagaaaa 20702058  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 13364766 - 13364722
Alignment:
Q  139 ccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||    
T  13364766 ccgacactgcttataatttgagaaaatcatataattcagtgtaat 13364722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 7996439 - 7996395
Alignment:
Q  139 ccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  7996439 ccgacactgctaataatttgagaaaatcatataattcagtgtaat 7996395  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 8022362 - 8022406
Alignment:
Q  139 ccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  8022362 ccgacactgctaataatttgagaaaatcatataattcagtgtaat 8022406  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 40181848 - 40181913
Alignment:
Q  118 tatgaagcactgatagggtcaccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    |||||||||| |||| || ||| ||||| ||| ||||||| |||||| || |||||||||||||||    
T  40181848 tatgaagcacggatacggacacagacactgctaataatttgagaaaatcacataattcagtgtaat 40181913  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 12443521 - 12443477
Alignment:
Q  139 ccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||||||| ||||||| |||||| || |||||||||||||||    
T  12443521 ccgacacagctaataatttgagaaaatcacataattcagtgtaat 12443477  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 23128710 - 23128678
Alignment:
Q  151 ataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||| |||||||||||||||||||||||||    
T  23128710 ataatttgagaaaaccatataattcagtgtaat 23128678  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 8383255 - 8383299
Alignment:
Q  139 ccgacacagcttataattttagaaaaccatataattcagtgtaat 183  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||    
T  8383255 ccgacaccgctaataatttgagaaaatcatataattcagtgtaat 8383299  T

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