View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_12 (Length: 241)
Name: NF11742_low_12
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29069352 - 29069584
Alignment:
| Q |
1 |
atctgaacctgacatagatatgtcgtaggtcatgtaggccgacctgatttataaaccacatggggtttatgttaacaccataattgtcatgtattaaact |
100 |
Q |
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| T |
29069352 |
atctgaacct-acatagatatgtcgtaggtcatgtaggccgacctgacttataaaccacatggggtttatgttaacaccgtaattgccacgtattaaact |
29069450 |
T |
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| Q |
101 |
t----------atgttatgctttatgacttggggactaaaacatgaatctttttaaaaagataaag-accaaaacacatttttggttaatgataaaggac |
189 |
Q |
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| T |
29069451 |
tccgttaacttatgttatgctttatgactaaaggactaaaacatgaatctttttaaaaagataaaggaccaaaacacatttttgattaatgataaaggac |
29069550 |
T |
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| Q |
190 |
caaatatatctatcggtagaatgattaaaaagta |
223 |
Q |
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| T |
29069551 |
caaatatatctatcagtagaatgattaaaaagta |
29069584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 39559952 - 39559905
Alignment:
| Q |
129 |
aaacatgaatctttttaaaaagata-aagaccaaaacacatttttggt |
175 |
Q |
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| T |
39559952 |
aaacatgaatctttttaaaaagatataggaccaaaacacaattttggt |
39559905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 43005031 - 43004989
Alignment:
| Q |
124 |
gactaaaacatgaatctttttaaaaagataaa-gaccaaaaca |
165 |
Q |
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| T |
43005031 |
gactaaaacatgaatctttttaaaaagataaaggaccaaaaca |
43004989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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