View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_13 (Length: 233)
Name: NF11742_low_13
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 28289413 - 28289217
Alignment:
| Q |
18 |
ccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaaggtaacaa |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||| |
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| T |
28289413 |
ccatgatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacagctttccgtccagttgtgatctccaaggcaacaa |
28289314 |
T |
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| Q |
118 |
ccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtttg |
214 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28289313 |
ccccaaaactatacacatctgactctttgctagccttacctgtacttatatattctggagccaaatagcctaaggttccggcaaccactgttgtttg |
28289217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 28279548 - 28279351
Alignment:
| Q |
18 |
ccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaaggtaacaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
28279548 |
ccataatgatcccaaacccactcaatcaatcccttatctccatctttgtcctccataacttcaacggctttccttccagttgtgatctccaagacgacaa |
28279449 |
T |
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| Q |
118 |
ccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtttga |
215 |
Q |
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||||||| || || ||||| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||| |
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| T |
28279448 |
ccccaaagctatagacatcagattctttgctagccttacctgtacttatatattctggagccaaatatcctaaggttccagcaatcactgttgtttga |
28279351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 28264323 - 28264519
Alignment:
| Q |
18 |
ccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaaggtaacaa |
117 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| || ||| ||| ||||||||| ||| |||||| |||| |||| ||| ||||||| ||||| |
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| T |
28264323 |
ccataatgatcccaaacccagtcaattaatcccttatcttcaccttgttccttcataacttgaacagctttctttccagttgcgatttccaaggcaacaa |
28264422 |
T |
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| Q |
118 |
ccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggcaaccactgttgtttg |
214 |
Q |
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|||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28264423 |
ccccaaaactatacacatctgactctttgctagtcttacctgtacttatatattccggagccatatagcctaaggttccggcaaccactgttgtttg |
28264519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 28304340 - 28304521
Alignment:
| Q |
18 |
ccataatgatcccaaacccactcaatcaatcccttatctccatctttatccctcataacttcaacggctttccttccggttgtgatctccaaggtaacaa |
117 |
Q |
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|||||||||||||||||||||||||||| |||||| ||| ||||||| ||| ||||||||||| ||||| |||||| || ||||| ||| ||| | |
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| T |
28304340 |
ccataatgatcccaaacccactcaatcattcccttctcttcatctttctccttcataacttcagtagctttttttccggaggttatctctaagacaacta |
28304439 |
T |
|
| Q |
118 |
ccccaaaactgtacacatccgactctttgctagccttacctgtacttatatattcgggagccaaatagcctaaggttccggc |
199 |
Q |
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||||||||| || ||||| |||||||| || ||| | |||||||| | |||||| ||||| | |||||| || |||||||| |
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| T |
28304440 |
tcccaaaactataaacatctgactctttactcgcccttcctgtactcacatattctggagctagatagccgaatgttccggc |
28304521 |
T |
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