View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_3 (Length: 488)
Name: NF11742_low_3
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 46587579 - 46587185
Alignment:
| Q |
14 |
gatggtacatacccaatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagtctccaac |
113 |
Q |
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| T |
46587579 |
gatgatacatacccaatgtgtcatttatttggaaggggctatttttgatggcccattgagtgtagttagtgcctgcacgccaaccttcagagtctccaac |
46587480 |
T |
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| Q |
114 |
caagatgcttcttttggttccggccttgcttcctgaccctgcaaccattgaagcaatcacaaggaagataactccttggattaaaattctagccatatgt |
213 |
Q |
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| T |
46587479 |
caagatgcttcttttggttctggccttgcttcttgaccctgcaaccattgaagcaatcacaaggaagataactccttggattaaaattctagccatatgt |
46587380 |
T |
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| Q |
214 |
ttatgcatctttaattaatttgtacctacgatatgattagttgatggtaaattccaatttcactggtttatataaacctgattcaacaatgactaattaa |
313 |
Q |
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| T |
46587379 |
ttatgcatctttaattaatttgtacttacgatatgattagttgatggtaaattccaatttcactggtttatataaacctgattcaacaatgactaattaa |
46587280 |
T |
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| Q |
314 |
ctaaccagtctattgggtttccaaattcaatccatttctgttattttcccacaaaggttggaaaatatggtcatatggaacaatattgttaaaag |
408 |
Q |
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| T |
46587279 |
ctaaccagtctattgggtttccaaattcaatccatttctgttattttcccacaaaggttggaaaatatggtcatatggaacaatattgttaaaag |
46587185 |
T |
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