View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_4 (Length: 458)
Name: NF11742_low_4
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 46588217 - 46587769
Alignment:
| Q |
11 |
cagagacaaaaatacatcatcatttctttctaggta-cacaaaccacaataaaaaacataannnnnnnnctttcgatacttcaggaaagaaaaaacagat |
109 |
Q |
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| T |
46588217 |
cagagacaaaaatacatcatcgtatttatctaggtagcacaaaccacaataaaaaacataattttttttctttcgatactccaggaaagaaaaaacagat |
46588118 |
T |
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| Q |
110 |
tgaaaccatccattttatttatatattgaattcaactaccttaaaaggaaaaaacttgattcaattgggccatgagggctaaattaaaaggaacgtgtag |
209 |
Q |
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| T |
46588117 |
ggaaaccatccattttatttatattttgaattcaactaccttaaaaggaaataacttgattcaattgggccatgagggttaaattaaaaggaacgtgtag |
46588018 |
T |
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| Q |
210 |
atggaacagcaatgaacttggtgagtccagcaatacagtcataggcattaccttcatcagaggcaaagtaataaggcttcaactgattcagctcaatctt |
309 |
Q |
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| T |
46588017 |
atggaacagcaatgaacttggtgagtccagcaatacagtcataggcattgccttcatcagaggcaaagtaataaggcttcaattgattcagctcaatctt |
46587918 |
T |
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| Q |
310 |
tatcccctcaccaccaccttgttcagcactaccaagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctg |
409 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46587917 |
tatcccctcaccaccaccttgatcagcactaccaagcaactttgctcctctaaattcacacgtcgtgtaactccacatattcggtagcaagtaaacgctg |
46587818 |
T |
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| Q |
410 |
ggaacaaccgtggaatttcctgtagggggatacttgaacactgcattat |
458 |
Q |
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| T |
46587817 |
ggaacaaccgtggaatttcctgtagggggatacttgaacactgcattat |
46587769 |
T |
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