View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_5 (Length: 421)
Name: NF11742_low_5
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 3766295 - 3766688
Alignment:
| Q |
11 |
gaagcagagaaccaaataacaaattcaacccggttcgatccggttctaacaaacacgtactagtaaaagatttgaggtagatctattcttacatttgaag |
110 |
Q |
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| T |
3766295 |
gaagcagtgaaccaaataacaaattcaacccggttcgatccggttctaacaaacacgtactagtaaaagatttgaggtagatctattcttacatttgaag |
3766394 |
T |
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| Q |
111 |
acctgttttatggtgttgtgtatagaggtgaagacctctttgtgtgaaaagattcctgctggtccagcctatatgaaaacatacaaaaaggaaaatgtga |
210 |
Q |
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| T |
3766395 |
acctgttttatggtgttgtgtatagaggtgaagacctctttgtgtgaaaagattcctgctggtccagcctatatgaaaacatacaaaaaggaaaatgtga |
3766494 |
T |
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| Q |
211 |
aaagttagatattgattaaatggacagtgagaaatacttcgtaacaaaaatatggttgtttaatagattctttaaaattgctcacttgactagaaaaaga |
310 |
Q |
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| T |
3766495 |
aaagttaaatattgattaaatgggcagtgagaaatacttcgtaacaaaaatatggttgttcaatagattatttaaaattgctcacttgactggaaaaaga |
3766594 |
T |
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| Q |
311 |
aaaccaatcgagagttacaactcaatcggattttacacaaaaacagtcgatcaggagttgcgatctactcgagagcgaaattcaggatcttatt |
404 |
Q |
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| T |
3766595 |
aaaccaatcgagagttacaactcaatcggattttacacaaaaacagtcgatcaggagttgcgatctactcgagagcgaaattcaggagcttatt |
3766688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 48388621 - 48388707
Alignment:
| Q |
94 |
tattcttacatttgaagacctgttttatggtgttgtgtatagaggtgaagacctctttgtgtgaaaagattcctgctggtccagcct |
180 |
Q |
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| T |
48388621 |
tattcttacatttaaagacttgtttgattgtgttgtatatagaagtgaagacttccctgtgtgtcaagatacctgccggtccagcct |
48388707 |
T |
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