View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11742_low_7 (Length: 356)
Name: NF11742_low_7
Description: NF11742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11742_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 3435703 - 3436045
Alignment:
| Q |
1 |
ttgagggtagataactgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttcatccctagaggttattaatgacgaagctgatt |
100 |
Q |
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| T |
3435703 |
ttgagggtagataattgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttcatccctagagattattaatgacgaagctgatt |
3435802 |
T |
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| Q |
101 |
tgttggttgatgatgatttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatgcttgtttgtttgaggatgcttcgatttgtga |
200 |
Q |
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| T |
3435803 |
tgttggttgatgatgatttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatgcttgtttgtttgaggatgcttcgatttgtga |
3435902 |
T |
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| Q |
201 |
tgaaagtgaaaaagcggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatgagatgacggaggaatggatggaggaggacaag |
300 |
Q |
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| T |
3435903 |
tgaaagtgaaaaagcggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatgagatgacggaggaatggatggaggaggacaag |
3436002 |
T |
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| Q |
301 |
ttccgggaacaagaatttaatttgcaagataataatgatgatg |
343 |
Q |
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| T |
3436003 |
ttccgggaacaagaatttaatttgcaagataataatgaggatg |
3436045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 17964325 - 17964044
Alignment:
| Q |
16 |
tgcacggttgctagagaatggtttgattatgttcgtattttattggcaacttcatccctagaggttattaatgacgaagctgatttgttggttgatgatg |
115 |
Q |
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| T |
17964325 |
tgcacggtttatagagaaaggtatgattacgctcgtattttattgccagcttcttccttggaggttataaaagccgacgcagatttgttggttgatgatg |
17964226 |
T |
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| Q |
116 |
atttggtgaatattaaaataatggaggaatggggattctcattaggcgaggatgcttgtttgtttgaggatgcttcgatttgtgatgaaagtgaaaaagc |
215 |
Q |
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| T |
17964225 |
ctttgatgaatattaaaattgtagaggatttgggttttccgttcggcgaggatgcttgtttatttgaggatgatccgggttgtggtgataatgaagaagc |
17964126 |
T |
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| Q |
216 |
ggaagtacatgttgtttttgttgtgaataatgatgtagaaaatatggtgaatgagatgacggaggaatggatggaggaggac |
297 |
Q |
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| T |
17964125 |
agaggatcatggtgacttagttgtgaataatgacgtagataatttggtgaatgagatgtcggaggaatggatggaggaggac |
17964044 |
T |
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