View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_high_14 (Length: 332)
Name: NF11743_high_14
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 35 - 329
Target Start/End: Complemental strand, 27756304 - 27756010
Alignment:
| Q |
35 |
tcacgccgcttgatcagctccaccatgaccggcggtgcaacatacaaatgcgtcgccttaaacttctccaccgccgcaaaaatcttctccaaatcaaatc |
134 |
Q |
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| T |
27756304 |
tcacgccgcttgatcagctccaccatcaccggcggagcaacatacaaatgcgtcaccttaaacttctccaccgccgcaaaagtcttctccaaatcaaatc |
27756205 |
T |
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| Q |
135 |
taccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcacaaaacacacaaacac |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27756204 |
taccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcacaaaacacacaaacac |
27756105 |
T |
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| Q |
235 |
gttcttcccctcgccgttctggtcctgatccaccgctcccgccaccgctgtagctattaagttctggtgagtcagcatcactcctttgcttctcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27756104 |
gttcttcccctcgccgttctggtcctgatccaccgctcccgccaccgctgtagctattaagttctggtgagtcagcatcactcccttgcttctcc |
27756010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 27766991 - 27766760
Alignment:
| Q |
20 |
taaccactcacaaattcacgccgcttgatcagctccaccatgaccggcggtgcaacatacaaatgcgtcgccttaaacttctccaccgccgcaaaaatct |
119 |
Q |
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||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||| ||||||||||| || ||||||||||||||||||| ||| ||| |
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| T |
27766991 |
taaccactcacaacctcacgccgcttgaccagctccaccatcaccggcggagcaacaaacaaatgcgtcaccctaaacttctccaccgccgccaaagtct |
27766892 |
T |
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| Q |
120 |
tctccaaatcaaatctaccaccaaacgacaccaccgtgttccctctccgcagctgcgtgtacgttatccccactaaccccatcacgtggtgcattggcac |
219 |
Q |
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||||||||||||||||||| | | |||||||||||||||||||||| |||||||||||| |||| || | || |||||||| || ||||| ||||| |
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| T |
27766891 |
tctccaaatcaaatctacccgccatggacaccaccgtgttccctctcctcagctgcgtgtataatatcaccgccaatcccatcacatgatgcatcggcac |
27766792 |
T |
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| Q |
220 |
aaaacacacaaacacgttcttcccctcgccgt |
251 |
Q |
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||||| | ||||| |||||||||||||||| |
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| T |
27766791 |
caaacaaaggaacacattcttcccctcgccgt |
27766760 |
T |
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