View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_high_23 (Length: 281)
Name: NF11743_high_23
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_high_23 |
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| [»] scaffold0179 (4 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 2397 - 2339
Alignment:
| Q |
208 |
aaccgggaaccttaactgctaaccagttcaggagagaataaccagaaagactaaccact |
266 |
Q |
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| T |
2397 |
aaccgggaaccttaactgctaatcagttcaggagagaataaccagagagactaaccact |
2339 |
T |
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Target: scaffold0179; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 2451 - 2396
Alignment:
| Q |
79 |
aaaatgtcctttgaaatcatgttggtccacctttcgcaagtaacctcccctgttaa |
134 |
Q |
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| T |
2451 |
aaaatgtcctttgaaaacatgttggtccaccttttgcaagtaacctcccctgttaa |
2396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 2500 - 2456
Alignment:
| Q |
6 |
agaagcataggcgaaaaacatgaaatcctgctagcttatattcta |
50 |
Q |
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| T |
2500 |
agaaccataagcgaaaaacatgaaatcctgctagcttatattcta |
2456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 2519 - 2484
Alignment:
| Q |
47 |
tctatcacaagatcacaacagaaccataagcgaaaa |
82 |
Q |
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| T |
2519 |
tctatcacaaaatcacaacagaaccataagcgaaaa |
2484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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