View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11743_high_24 (Length: 254)
Name: NF11743_high_24
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 7320843 - 7320639
Alignment:
| Q |
29 |
aaaagatcaaaataaactatattactaccaacaacatatcatgatatacctgtgaagatagccaaagaatacaacacaagttcaacaatttgaagcacat |
128 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7320843 |
aaaagatcaaaataaattatattactaccaacaacatatcatgatatacctgtgaagatagccaaagaatacaacacaagttcaacaatttgaagcacat |
7320744 |
T |
|
| Q |
129 |
attagccaattctcaaacacacaaatgggttttggcaccagttatgaaaactataatgaaaaccattaaaaattttgtcatttctttccttccaaataac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7320743 |
attagccaattctcaaacacacaaatgggttttggcacccgttatgaaaacaataatgaaaaccattaaaaattttgtcatttctttcctttcaaataac |
7320644 |
T |
|
| Q |
229 |
ccacg |
233 |
Q |
| |
|
||||| |
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|
| T |
7320643 |
ccacg |
7320639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 40591949 - 40592050
Alignment:
| Q |
82 |
gaagatagccaaagaatacaacacaagttcaacaatttgaagcacatattagccaatt--ctcaaacacacaaatgggttttggcaccagttatgaaaac |
179 |
Q |
| |
|
|||| |||||||| ||||||| | |||||||||| |||| ||||| |||||||||| | ||| || |||||||||||||| ||||| |||||||||| |
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| T |
40591949 |
gaagctagccaaaaaatacaataaaagttcaacagtttgtagcactaattagccaatatacccaagcaaacaaatgggttttgacaccaattatgaaaac |
40592048 |
T |
|
| Q |
180 |
ta |
181 |
Q |
| |
|
|| |
|
|
| T |
40592049 |
ta |
40592050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 11217804 - 11217694
Alignment:
| Q |
81 |
tgaagatagccaaagaatacaacacaagttcaacaatttgaagcacatattagccaattctcaaacacacaaatg-ggttttggcaccagttatgaaaac |
179 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||| ||| |||||||||| | |||||||| || || | ||||||||||| |||||||||| |
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|
| T |
11217804 |
tgaagatagccgaaaaatacaacacaagttcaacagtttgaaacaccaattagccaatacccaaacacataagtgagtttttggcaccaattatgaaaac |
11217705 |
T |
|
| Q |
180 |
tataatgaaaa |
190 |
Q |
| |
|
||||||||||| |
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|
| T |
11217704 |
tataatgaaaa |
11217694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 30236640 - 30236599
Alignment:
| Q |
29 |
aaaagatcaaaataaactatattactaccaacaacatatcat |
70 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||| |
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|
| T |
30236640 |
aaaagatcaaaatgaaatatattactaccaacaacatgtcat |
30236599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 7958038 - 7957955
Alignment:
| Q |
107 |
agttcaacaatttgaagcacatattagccaattctcaaacacacaaatgggttttggcaccagttatgaaaactataatgaaaa |
190 |
Q |
| |
|
||||||||||||||||||| ||||| | || | || ||||||||||||||||||||||| |||| |||||||| ||||||| |
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|
| T |
7958038 |
agttcaacaatttgaagcattaattaggcgatacccacgcacacaaatgggttttggcaccaattataaaaactatgatgaaaa |
7957955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 1710886 - 1710848
Alignment:
| Q |
152 |
aatgggttttggcaccagttatgaaaactataatgaaaa |
190 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |
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|
| T |
1710886 |
aatgggttttggcaacaattatgaaaactataatgaaaa |
1710848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 39882505 - 39882543
Alignment:
| Q |
152 |
aatgggttttggcaccagttatgaaaactataatgaaaa |
190 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
39882505 |
aatgggttttggcaccagtgatgaaagctataatgaaaa |
39882543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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