View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11743_high_31 (Length: 236)
Name: NF11743_high_31
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 35036014 - 35035812
Alignment:
| Q |
11 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35036014 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagat |
35035915 |
T |
|
| Q |
111 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35035914 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagct |
35035815 |
T |
|
| Q |
211 |
tcg |
213 |
Q |
| |
|
||| |
|
|
| T |
35035814 |
tcg |
35035812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 35019813 - 35019629
Alignment:
| Q |
13 |
gaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagatgg |
112 |
Q |
| |
|
|||||||| | |||||||||||| || ||||||||| | | ||||| ||||||| || ||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
35019813 |
gaagcaaaagttttgtcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgg |
35019714 |
T |
|
| Q |
113 |
ctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggcca |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35019713 |
gtccgtatttgtcggctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggcca |
35019629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 35029905 - 35029720
Alignment:
| Q |
13 |
gaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaag-atg |
111 |
Q |
| |
|
|||||||| | |||||| ||||| |||||||| ||| | | ||||| ||||||| |||||||| ||| |||||||||||||| ||||||||| ||| |
|
|
| T |
35029905 |
gaagcaaaagttttgtcatttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatg |
35029806 |
T |
|
| Q |
112 |
gctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggcca |
197 |
Q |
| |
|
| |||||||||||||||||||||||| ||||| | | |||| ||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
35029805 |
ggtccgtatttgtcggctaagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggcca |
35029720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 35044175 - 35043986
Alignment:
| Q |
11 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagat |
110 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || ||| | || ||||| |||||||| | ||||| ||| |||||||| ||||| | ||||||||| |
|
|
| T |
35044175 |
gagaagcaaaggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
35044076 |
T |
|
| Q |
111 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagc |
200 |
Q |
| |
|
| ||||||||| ||||||| || || ||||||| || |||| | ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35044075 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagc |
35043986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University