View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_high_32 (Length: 232)
Name: NF11743_high_32
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 46306028 - 46305917
Alignment:
| Q |
97 |
atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc |
196 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46306028 |
atttctagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaata---gataactctagacacacttgtagaagc |
46305932 |
T |
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| Q |
197 |
ttccttgatacacac |
211 |
Q |
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||||||||||||||| |
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| T |
46305931 |
ttccttgatacacac |
46305917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 46306144 - 46306063
Alignment:
| Q |
15 |
cagagatggatgggagtaaaaacaaaataaaataggaatcgattaatctatatatcacacttgtaggagcttccttaatacaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46306144 |
cagagatggatgggagtaaaaacaaaataaaataggaatcgattaatc----tatcacacttgtaggagcttccttaatacaattt |
46306063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 46025371 - 46025482
Alignment:
| Q |
97 |
atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc |
196 |
Q |
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|||| |||||||| ||||||||| |||||||||||| || ||||||||||| ||||| || ||||||||| |||||||||| |||||||||||| ||| |
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| T |
46025371 |
atttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggaggaatttacaagtgctaata---gataactctatacacacttgtaggagc |
46025467 |
T |
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| Q |
197 |
ttccttgatacacac |
211 |
Q |
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|||||| |||||||| |
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| T |
46025468 |
ttccttaatacacac |
46025482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 46262287 - 46262176
Alignment:
| Q |
97 |
atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggagtaattttcaggtgctaatagatgataactctagacacacttgtagaagc |
196 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||| || | ||||||||| ||||| || ||||||||| |||||||||| ||||||||| || ||| |
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| T |
46262287 |
atttctagaaaacttacaattttattgatttcaaatgtcgactacaaggaggaatttacaagtgctaata---gataactctatacacacttgcaggagc |
46262191 |
T |
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| Q |
197 |
ttccttgatacacac |
211 |
Q |
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|||||| |||||||| |
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| T |
46262190 |
ttccttaatacacac |
46262176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 46306247 - 46306197
Alignment:
| Q |
97 |
atttatagaaaacgtacaattttcttgatttcaaatctcaagtacaaggag |
147 |
Q |
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|||| |||||||| ||||||||| |||||||||||| || ||||||||||| |
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| T |
46306247 |
atttctagaaaacttacaattttattgatttcaaatgtcgagtacaaggag |
46306197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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