View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_1 (Length: 690)
Name: NF11743_low_1
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 22 - 393
Target Start/End: Original strand, 27122423 - 27122794
Alignment:
| Q |
22 |
acaatacctatatatataattttctcattatgaaggtattgttcatttcttttctcctaattagtatggttatgttaaaccagaacaatctggtcgaggg |
121 |
Q |
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| T |
27122423 |
acaatacctatatatataattttctcatcatgaaggtattgttcatttcttttctcctaattagtatggttatgttaaaccagaacaatctggtcgaggg |
27122522 |
T |
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| Q |
122 |
agaaatttcatataaagatatagagaagagatcaagaaaaaatcatcatcattataatgatacagaaggaaattacactcgaggttgctcccctataaat |
221 |
Q |
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| T |
27122523 |
agaaatttcatttaaagatatagagaagagatcaagaaaaaatcatcatcattataatgatacagaaggaaattacactcgaggttgctcccctataaat |
27122622 |
T |
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| Q |
222 |
aggtgtcgtggacgtgatgatcatcagaatcataatgaatgattagtacctatgataatgatattttccattgtatctcacaaaactatgtttctatgat |
321 |
Q |
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| T |
27122623 |
aggtgtcgtggacgtgatgatcatcagaatcataatgaatgattagtacctatgataatgatattttccattgtatctcacaaaactatgtttctatgat |
27122722 |
T |
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| Q |
322 |
tatatatacaccaaaaagatccaacggtgcaacatattgtccgtttgtcttctattcatatgtaattaatcc |
393 |
Q |
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| T |
27122723 |
tatatatacaccaaaaagatctaactgtgcaacatattgtctgtttgtcttcttttcatatgtaattaatcc |
27122794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 447 - 643
Target Start/End: Original strand, 27122900 - 27123097
Alignment:
| Q |
447 |
gttcccctttgtattaagtttgtgcaatctttggcataagtcttccttatatttctggcataaataatttactttctttgcgttgctcttcaagtttgac |
546 |
Q |
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| T |
27122900 |
gttcctctttgtattaagtttgtgcaatctttggcataagtctttcttatatttctggcaaaaataatttactttctttgtgttgctcttcaagtttgac |
27122999 |
T |
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| Q |
547 |
c-ttatttattttttctgattccttaagtaaaaatctagagtatgtttcttgtaattacaattgagatggaaaaatgactttatggagatttgataat |
643 |
Q |
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| T |
27123000 |
ctttatttatttttcctgattcctcaagtaaaaatatagagtatctttctggtaattataattcagattgcaaaatgattttatggagatttgataat |
27123097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 2601723 - 2601690
Alignment:
| Q |
358 |
ttgtccgtttgtcttctattcatatgtaattaat |
391 |
Q |
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| T |
2601723 |
ttgtccgtttgtcttctattcatgtgtaattaat |
2601690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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