View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_10 (Length: 431)
Name: NF11743_low_10
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Original strand, 6565229 - 6565640
Alignment:
| Q |
2 |
ggagggagcaggaaaatggctgcacataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgc |
101 |
Q |
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| T |
6565229 |
ggagggagcaggaaaatggctgcacataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgc |
6565328 |
T |
|
| Q |
102 |
attattaattgttctacacatcatttgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatga |
201 |
Q |
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| T |
6565329 |
attattaattgttctacacatcatttgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatga |
6565428 |
T |
|
| Q |
202 |
agagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565429 |
agagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagt |
6565528 |
T |
|
| Q |
302 |
cagtgatcgatcaattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatat |
401 |
Q |
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| T |
6565529 |
cagtgatcgatcaattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatat |
6565628 |
T |
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| Q |
402 |
ctatagacatcg |
413 |
Q |
| |
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| T |
6565629 |
ctatagacatcg |
6565640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
167 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
266 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
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| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
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| Q |
267 |
ctccttatct |
276 |
Q |
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|||||||||| |
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| T |
34261399 |
ctccttatct |
34261390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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