View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11743_low_11 (Length: 424)

Name: NF11743_low_11
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11743_low_11
NF11743_low_11
[»] chr4 (13 HSPs)
chr4 (1-77)||(46306121-46306197)
chr4 (139-266)||(46024953-46025083)
chr4 (139-225)||(46306535-46306617)
chr4 (1-77)||(46025208-46025284)
chr4 (1-77)||(46262374-46262450)
chr4 (1-77)||(46306334-46306410)
chr4 (313-352)||(46306624-46306663)
chr4 (193-266)||(46263158-46263238)
chr4 (139-197)||(46262575-46262629)
chr4 (90-133)||(46025129-46025172)
chr4 (90-133)||(46262486-46262529)
chr4 (90-133)||(46306446-46306489)
chr4 (263-312)||(46302775-46302822)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46306121 - 46306197
Alignment:
Q  1 tgtttttactcccatccatctctgattttgattctttttggattatcagtttttgccacaaaactttagtcttttcc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46306121 tgtttttactcccatccatctctgattttgattctttttggattatcagtttttgccacaaaactttagtcttttcc 46306197  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 46025083 - 46024953
Alignment:
Q  139 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttc-------tttgtctttt 231  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| ||||||||||||||||||| |||       ||||||||||    
T  46025083 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctcattccctcttttttgtctttt 46024988  T
Q  232 aggaaccaacatccatttgataatcacgacaagaa 266  Q
    |||||||||||| |||||||||||||| |||||||    
T  46024987 aggaaccaacattcatttgataatcaccacaagaa 46024953  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 46306535 - 46306617
Alignment:
Q  139 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttctttg 225  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  46306535 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctctttctttg 46306617  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46025284 - 46025208
Alignment:
Q  1 tgtttttactcccatccatctctgattt-tgattctttttggattatcagtttttgccacaaaactttagtcttttcc 77  Q
    ||||||||||||| |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46025284 tgtttttactccc-tccatctctgatctatgattcttttcggattatcggtttttgccacaaaactttagtcttttcc 46025208  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46262374 - 46262450
Alignment:
Q  1 tgtttttactcccatccatctctgattt-tgattctttttggattatcagtttttgccacaaaactttagtcttttcc 77  Q
    ||||||||||||| |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46262374 tgtttttactccc-tccatctctgatctatgattcttttcggattatcggtttttgccacaaaactttagtcttttcc 46262450  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46306334 - 46306410
Alignment:
Q  1 tgtttttactcccatccatctctgattt-tgattctttttggattatcagtttttgccacaaaactttagtcttttcc 77  Q
    ||||||||||||| |||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46306334 tgtttttactccc-tccatctctgatctatgattcttttcggattatcggtttttgccacaaaactttagtcttttcc 46306410  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
Q  313 tatacactctggccaaaaacatataagttacgcataacat 352  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306624 tatacactctggccaaaaacatataagttacgcataacat 46306663  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 46263158 - 46263238
Alignment:
Q  193 aacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 266  Q
    ||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46263158 aacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46263238  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 46262575 - 46262629
Alignment:
Q  139 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacat 197  Q
    |||||||| |||||||||||||| |||||||    ||||||||||||||||||||||||    
T  46262575 caccaaccacaagttctactgcacatgattc----acgtccttggccttttgtaaacat 46262629  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 46025172 - 46025129
Alignment:
Q  90 tcataatttttatcgagttacaagacaacatgaatacaattttt 133  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46025172 tcataatttttatcaatatacaagacaacatgaatacaattttt 46025129  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 46262486 - 46262529
Alignment:
Q  90 tcataatttttatcgagttacaagacaacatgaatacaattttt 133  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46262486 tcataatttttatcaatatacaagacaacatgaatacaattttt 46262529  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 46306446 - 46306489
Alignment:
Q  90 tcataatttttatcgagttacaagacaacatgaatacaattttt 133  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46306446 tcataatttttatcaatatacaagacaacatgaatacaattttt 46306489  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
Q  263 agaagattattattagtaaacaacatgcagaaagaagttgagtctttata 312  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  46302775 agaagattatta--aataaccaacatgcagaaagaagttgagtctttata 46302822  T

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