View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_12 (Length: 403)
Name: NF11743_low_12
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 209 - 385
Target Start/End: Original strand, 26881255 - 26881434
Alignment:
| Q |
209 |
taggttataaattgtaaaactaatcaagatgcaagaa-tc--cccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
305 |
Q |
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| T |
26881255 |
taggttataaattgtaaaactaatcaagatgcaagaactcatcccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
26881354 |
T |
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| Q |
306 |
ccatgggagatcaaatccacattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttacttttt |
385 |
Q |
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| T |
26881355 |
ccatgggagatcaaatccaaattccttgagtatccaaacaagtgtaatattagagttctttcaacaataatttacttttt |
26881434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 26881097 - 26881250
Alignment:
| Q |
1 |
ggactcaccaaaatgaagttgttcccaaggccatgatgcttagagaaatggtgaaagccggtctccttttggtggaggaggttgttttaataggagttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26881097 |
ggactcaccaaaatgaagttgttcccaaggccatgatacttagagaaatggtgaaagccggtctccttttggtcgaggaggttgttttaataggagttta |
26881196 |
T |
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| Q |
101 |
tgttccaatcgaggaagcaaccaggcgggaattagggaacaagagaagaacaca |
154 |
Q |
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| T |
26881197 |
tgttctaatcgaggaagcaacgaggcgggaattacggaacaagagaagaacaca |
26881250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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