View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_15 (Length: 331)
Name: NF11743_low_15
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5820296 - 5820622
Alignment:
| Q |
1 |
gtacaagatatatgtaaaaggcccactatga-----aaaattgcaagccagtttcaactttagtggacacaagaatcaaacttgttttgagcaatgatga |
95 |
Q |
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| T |
5820296 |
gtacaagatatattgaaaaggcccactatgaaatgaaaaattgcaagccagtttcaactttagtggacacaagaatcaaacttgttttgagcaatgatga |
5820395 |
T |
|
| Q |
96 |
aaaagaagtggattcaacacattacaagcagatagtgggatcaaccaacaaaaataatctctcaatctaaacaaacactcacatttcactaatgttgaga |
195 |
Q |
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| T |
5820396 |
aaaagaagtggattcaacacattagaagcaaatagtgggatcaactaacaaaaataatctctcaatctaaacaaacactcacatttcactaatgttgaga |
5820495 |
T |
|
| Q |
196 |
ttttatacttccacaacttgtttctctttatttgaacattctctttcacatctcaacccaacaaattattttatggcattcctcat---------ttttg |
286 |
Q |
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| T |
5820496 |
ttttatacttccacaacttgtttctctttatatgaacattctctttcacatctcaacccaacaaattattttatggcattcctcatattatctgattttg |
5820595 |
T |
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| Q |
287 |
aaataacaatggcaaaccctaacttct |
313 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
5820596 |
aaataacaatgtcaaaccctaacttct |
5820622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 32251837 - 32251891
Alignment:
| Q |
146 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagatttta |
200 |
Q |
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||||||| |||||||||||||| || || |||||||||| |||||||||||||| |
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| T |
32251837 |
aaaataacctctcaatctaaacgaaaacccacatttcacggatgttgagatttta |
32251891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 35011162 - 35011094
Alignment:
| Q |
146 |
aaaataatctctcaatctaaacaaacactcacatttcactaatgttgagattttatacttccacaactt |
214 |
Q |
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||||||| |||| ||||||||||||||||| |||||||||| | || |||||||| | ||| ||||||| |
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| T |
35011162 |
aaaataacctcttaatctaaacaaacactcgcatttcactactattaagattttacatttcgacaactt |
35011094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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