View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_16 (Length: 327)
Name: NF11743_low_16
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9471301 - 9470990
Alignment:
| Q |
1 |
agcacaaaaacatctaatgctgaggtagaatcttttattcctttggtgaaatttcactacactgtacatattcttaccttttgactaagattttgagtgt |
100 |
Q |
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| T |
9471301 |
agcacaaaaacatctaatgctgaggtagaatcttttattcctttggtgaaatttcactacactgtacatattcttaccttttgactaagattttgagtgt |
9471202 |
T |
|
| Q |
101 |
ttgggtcaatttgaatagggaactaccaaaaagtcaaacttggcgaattcaagttcaaatggatttggagatttcatatttgttgatgatgaacacaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471201 |
ttgggtcaatttgaatagggaactaccaaaaagtcaaacttggcgaattcaagttcaaatggatttggagatttcatatttgttgatgatgaacacaagc |
9471102 |
T |
|
| Q |
201 |
cagtggaggatcagccagtgccaatggctttagagcaaacagaaccaatgcatagcgaatcggatcggatggtaattctttaatgtcttgtttatttaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9471101 |
cagtggaggatcagccagtgccaatggctttagagcaaacagaaccaatgcatagcgaatccgatcggatggtaattctttaatgtcttgtttatttaat |
9471002 |
T |
|
| Q |
301 |
tcgttaataagt |
312 |
Q |
| |
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|||||||||||| |
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| T |
9471001 |
tcgttaataagt |
9470990 |
T |
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