View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_17 (Length: 322)
Name: NF11743_low_17
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 29683898 - 29684202
Alignment:
| Q |
18 |
cccattcctgcagtttcctcgtggaatttgttcccccatccccacgggaaagttcctcgactgtggattcccaaataggggcagttctcaaggggatctc |
117 |
Q |
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| T |
29683898 |
cccattcctgcagtttcctcgtggaatttgttcccccatccccacgggaaagttcctcgactgtggattcccaaataggggcagttctcaaggggatctc |
29683997 |
T |
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| Q |
118 |
tatttacgaatgtaagtaagttgacatgttacggtcaagccaaattagaaaaatattaagctaggnnnnnnnnataaaagttagaaacattagaaataga |
217 |
Q |
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| T |
29683998 |
tatttacgaatgtaagtaagttgacatgttacggtcaagccaaattagaaaaatattaagctaggttttttttatcaaagttagaaacattagaaataga |
29684097 |
T |
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| Q |
218 |
gagacggagatttttaggttatgtaagcgcaactcggtcggtagcagcagggacaatgatatgcatggtcgaagttcaaaccttagactctccacttctc |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29684098 |
gagacggagatttttaggttatgtaagcgcaactcagtcggtagctgcagggacaatgatatgcatggtcgaagtttaaaccttagactccccacttctc |
29684197 |
T |
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| Q |
318 |
tacat |
322 |
Q |
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||||| |
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| T |
29684198 |
tacat |
29684202 |
T |
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