View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11743_low_18 (Length: 318)

Name: NF11743_low_18
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11743_low_18
NF11743_low_18
[»] scaffold0642 (1 HSPs)
scaffold0642 (104-300)||(4194-4386)
[»] scaffold0345 (1 HSPs)
scaffold0345 (104-300)||(14106-14298)
[»] scaffold0105 (1 HSPs)
scaffold0105 (104-300)||(24683-24875)
[»] scaffold1526 (2 HSPs)
scaffold1526 (104-300)||(1015-1207)
scaffold1526 (1-67)||(929-988)
[»] chr8 (1 HSPs)
chr8 (1-300)||(44495596-44495874)
[»] chr4 (2 HSPs)
chr4 (131-300)||(15707450-15707615)
chr4 (248-293)||(28336295-28336340)
[»] chr2 (4 HSPs)
chr2 (104-300)||(3378326-3378516)
chr2 (180-259)||(30355844-30355920)
chr2 (4-67)||(3378543-3378599)
chr2 (8-93)||(30356023-30356111)
[»] scaffold0016 (2 HSPs)
scaffold0016 (172-300)||(53719-53847)
scaffold0016 (4-94)||(53642-53725)
[»] chr5 (4 HSPs)
chr5 (7-81)||(36932835-36932912)
chr5 (175-237)||(17850513-17850575)
chr5 (113-183)||(36932947-36933017)
chr5 (232-266)||(36933044-36933078)


Alignment Details
Target: scaffold0642 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 104 - 300
Target Start/End: Complemental strand, 4386 - 4194
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4386 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 4287  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4286 tgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 4194  T

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Target: scaffold0345 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 104 - 300
Target Start/End: Complemental strand, 14298 - 14106
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14298 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 14199  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14198 tgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 14106  T

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Target: scaffold0105 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 24683 - 24875
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24683 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcaacgacggcggaggagggtggccggagtaggatt 24782  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24783 tgagtttgccgtgttcggtcatga----ttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 24875  T

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Target: scaffold1526 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 1015 - 1207
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  1015 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatt 1114  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1115 tgagtttgccgtgttcggtcatga----ttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 1207  T

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Target: scaffold1526; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 929 - 988
Alignment:
Q  1 taacggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggagg 67  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  929 taacggaaaaagcttagtagccataactgtaat-------aggggcggaggggtcggatccaggagg 988  T

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Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 44495874 - 44495596
Alignment:
Q  1 taacggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggaggagggtcggggtgagagaaactgacggcagggat 100  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||               ||||| |||||||||| |    
T  44495874 taacggaaaaagcttagtagccataactgtaataggg-------gcggaggggtcggatccaggagg---------------gaaaccgacggcaggggt 44495797  T
Q  101 aaggg-----gtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccgga 195  Q
    |||||     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  44495796 aagggttagggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccgga 44495697  T
Q  196 gtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtg 295  Q
     ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495696 ataggatttgagtttgccgtgttcggtcatgattgtttg----tttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtg 44495601  T

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Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 15707615 - 15707450
Alignment:
Q  131 ccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattg 230  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707615 ccatggaaagactcgtactaaagaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattg 15707516  T
Q  231 tttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707515 tttg----tttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 15707450  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 28336295 - 28336340
Alignment:
Q  248 agttgggggttaggagggaagaacgaagccactcaccgatctggag 293  Q
    ||||||||||||||||||| ||||||| ||||| ||| ||||||||    
T  28336295 agttgggggttaggagggatgaacgaaaccactaaccaatctggag 28336340  T

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Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 104 - 300
Target Start/End: Complemental strand, 3378516 - 3378326
Alignment:
Q  104 gggtgaagaggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggaggagggtggccggagtaggatt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  3378516 gggtgaagaggtgggaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgcgacgacggcggaggagggtggccggagtaggatt 3378417  T
Q  204 tgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 300  Q
    |||    |   |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378416 tga--aaggattgttcggtcatga----ttgtttgtttggtggaagttgggggttaggagggaagaacgaagccactcaccgatctggagtgaattc 3378326  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 30355920 - 30355844
Alignment:
Q  180 gaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggtta 259  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    ||||||| ||||||||||||    
T  30355920 gaggagggtggccggaggaggatttgggtttgtcgtgttcggtcatgattgtttgt---gttggtgggagttgggggtta 30355844  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 3378599 - 3378543
Alignment:
Q  4 cggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggagg 67  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  3378599 cggaaaaagcttagtagccataactgtaat-------aggggcggaggggtcggatccaggagg 3378543  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 30356111 - 30356023
Alignment:
Q  8 aaaagcttagtagccataactgtaatagggaggagggg---cggaggggtcggatccaggaggagggtcggggtgagagaaactgacgg 93  Q
    |||||||| |||||||| |  ||||||||||||||| |   ||||||||||||| |||||||| ||  ||||||||| ||||| |||||    
T  30356111 aaaagcttggtagccatgagggtaatagggaggaggaggagcggaggggtcggagccaggagggggaacggggtgagggaaaccgacgg 30356023  T

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Target: scaffold0016 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 53719 - 53847
Alignment:
Q  172 cgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaac 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53719 cgacggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgtttgtttggtggaagttgggggttaggagggaagaac 53818  T
Q  272 gaagccactcaccgatctggagtgaattc 300  Q
    |||||||||||||| ||||||||||||||    
T  53819 gaagccactcaccgctctggagtgaattc 53847  T

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Target: scaffold0016; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 53642 - 53725
Alignment:
Q  4 cggaaaaagcttagtagccataactgtaatagggaggaggggcggaggggtcggatccaggaggagggtcggggtgagagaaactgacggc 94  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  53642 cggaaaaagcttagtagccataactgtaataggg-------gcggaggggtcggatccaggaggagggtcggggtgagggaaaccgacggc 53725  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 36932835 - 36932912
Alignment:
Q  7 aaaaagcttagtagccataactgtaatagggaggagg---ggcggaggggtcggatccaggaggagggtcggggtgag 81  Q
    |||||||||||||||||| | ||||||| |||| |||   ||||||||||||||||| ||||||| ||||||||||||    
T  36932835 aaaaagcttagtagccatgagtgtaataaggagaaggaagggcggaggggtcggatcgaggaggacggtcggggtgag 36932912  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17850513 - 17850575
Alignment:
Q  175 cggcggaggagggtggccggagtaggatttgagtttgccgtgttcggtcatgattgtttgttt 237  Q
    ||||| ||| ||||| |||||| ||||||||||||||  |||||||| |||||| ||||||||    
T  17850513 cggcgaaggtgggtgtccggaggaggatttgagtttgttgtgttcgggcatgatggtttgttt 17850575  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 36932947 - 36933017
Alignment:
Q  113 ggtggcaaattggaaatgccatggaaagactcgtactaaggaggttgaaaggattgaaacgacggcggagg 183  Q
    ||||| | |||| |||||||||||||||| ||||||  |||||||  || |||||| ||||||||||||||    
T  36932947 ggtgggagattgaaaatgccatggaaagagtcgtacagaggaggtgaaagggattggaacgacggcggagg 36933017  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 36933044 - 36933078
Alignment:
Q  232 ttgtttgtttggtggaagttgggggttaggaggga 266  Q
    ||||||||| |||||||||||||||||||||||||    
T  36933044 ttgtttgttcggtggaagttgggggttaggaggga 36933078  T

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