View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11743_low_19 (Length: 313)

Name: NF11743_low_19
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11743_low_19
NF11743_low_19
[»] chr1 (29 HSPs)
chr1 (1-299)||(30829313-30829605)
chr1 (1-299)||(24471161-24471454)
chr1 (1-129)||(43319201-43319335)
chr1 (1-65)||(33611485-33611549)
chr1 (1-65)||(18583619-18583683)
chr1 (1-64)||(32817687-32817750)
chr1 (72-129)||(43318990-43319047)
chr1 (1-58)||(49677503-49677560)
chr1 (1-64)||(17000398-17000461)
chr1 (1-64)||(28866707-28866770)
chr1 (1-64)||(34162797-34162860)
chr1 (1-64)||(40650751-40650814)
chr1 (80-128)||(9445897-9445945)
chr1 (1-73)||(38950289-38950361)
chr1 (13-65)||(40908009-40908061)
chr1 (1-65)||(49786289-49786352)
chr1 (1-64)||(42545987-42546050)
chr1 (79-128)||(800603-800652)
chr1 (1-58)||(32542416-32542473)
chr1 (4-64)||(7011233-7011293)
chr1 (1-64)||(15069917-15069981)
chr1 (1-65)||(23442758-23442822)
chr1 (1-64)||(34006279-34006342)
chr1 (1-64)||(44573172-44573235)
chr1 (1-64)||(45567952-45568015)
chr1 (12-58)||(45046933-45046979)
chr1 (11-56)||(41584754-41584799)
chr1 (1-65)||(800877-800941)
chr1 (4-64)||(38885251-38885310)
[»] chr5 (30 HSPs)
chr5 (1-292)||(26319099-26319384)
chr5 (1-299)||(37094758-37095054)
chr5 (1-64)||(15799207-15799270)
chr5 (1-65)||(24203759-24203823)
chr5 (1-125)||(38640704-38640833)
chr5 (1-111)||(36359608-36359725)
chr5 (1-58)||(6156713-6156770)
chr5 (1-65)||(25747007-25747071)
chr5 (1-64)||(14111879-14111942)
chr5 (1-64)||(29862594-29862657)
chr5 (1-65)||(34440715-34440779)
chr5 (1-64)||(4064796-4064859)
chr5 (1-64)||(20891595-20891658)
chr5 (1-56)||(38871653-38871708)
chr5 (1-64)||(28083454-28083517)
chr5 (1-64)||(31221415-31221478)
chr5 (1-64)||(38692859-38692921)
chr5 (1-64)||(39524758-39524821)
chr5 (1-64)||(40620066-40620129)
chr5 (1-58)||(15957731-15957788)
chr5 (1-65)||(26190373-26190437)
chr5 (1-64)||(8032253-8032316)
chr5 (1-64)||(38372291-38372354)
chr5 (79-129)||(28445415-28445465)
chr5 (1-58)||(33487592-33487649)
chr5 (1-66)||(37183856-37183921)
chr5 (1-65)||(12465185-12465245)
chr5 (79-129)||(16429133-16429183)
chr5 (72-129)||(8739198-8739255)
chr5 (72-129)||(38640988-38641045)
[»] chr2 (19 HSPs)
chr2 (8-300)||(33366954-33367231)
chr2 (2-125)||(25715386-25715510)
chr2 (1-64)||(15995184-15995247)
chr2 (1-64)||(17474870-17474933)
chr2 (1-64)||(42894397-42894460)
chr2 (1-64)||(45153862-45153925)
chr2 (1-62)||(36949018-36949079)
chr2 (1-58)||(41510505-41510562)
chr2 (1-64)||(4268309-4268372)
chr2 (1-64)||(32187940-32188003)
chr2 (5-129)||(9847425-9847555)
chr2 (1-64)||(33452514-33452577)
chr2 (1-64)||(36875005-36875068)
chr2 (1-64)||(39447182-39447245)
chr2 (72-129)||(9847217-9847274)
chr2 (1-64)||(41854970-41855033)
chr2 (1-58)||(25217868-25217924)
chr2 (1-64)||(34517121-34517183)
chr2 (1-64)||(44465798-44465862)
[»] chr8 (20 HSPs)
chr8 (129-300)||(16704951-16705120)
chr8 (1-58)||(40994812-40994869)
chr8 (1-129)||(41530689-41530824)
chr8 (1-64)||(27928017-27928080)
chr8 (1-129)||(7971002-7971137)
chr8 (1-64)||(3094701-3094764)
chr8 (1-64)||(44106243-44106306)
chr8 (1-58)||(8885535-8885592)
chr8 (1-65)||(31519967-31520031)
chr8 (1-64)||(37248578-37248641)
chr8 (17-129)||(24627603-24627723)
chr8 (1-65)||(21004410-21004473)
chr8 (1-64)||(34853349-34853411)
chr8 (10-64)||(9073533-9073587)
chr8 (1-58)||(28916803-28916860)
chr8 (1-129)||(31234739-31234872)
chr8 (79-129)||(31234528-31234578)
chr8 (1-58)||(35676620-35676677)
chr8 (15-64)||(42280967-42281016)
chr8 (11-39)||(11698387-11698415)
[»] chr3 (30 HSPs)
chr3 (1-129)||(45244409-45244539)
chr3 (1-131)||(32025003-32025139)
chr3 (3-65)||(35142096-35142158)
chr3 (1-64)||(46622860-46622923)
chr3 (1-64)||(47740008-47740071)
chr3 (1-111)||(48304011-48304127)
chr3 (1-65)||(47302039-47302103)
chr3 (1-64)||(34821419-34821482)
chr3 (1-64)||(39149829-39149892)
chr3 (12-65)||(43473044-43473097)
chr3 (1-64)||(501216-501280)
chr3 (1-64)||(38977824-38977887)
chr3 (1-64)||(50716272-50716335)
chr3 (1-64)||(50796512-50796575)
chr3 (1-64)||(51258422-51258485)
chr3 (1-64)||(51540690-51540753)
chr3 (1-58)||(3352148-3352205)
chr3 (1-65)||(28873023-28873087)
chr3 (1-64)||(3902882-3902945)
chr3 (1-64)||(33438542-33438604)
chr3 (12-66)||(52777261-52777315)
chr3 (72-125)||(45244691-45244744)
chr3 (1-65)||(2358697-2358761)
chr3 (1-51)||(3937408-3937458)
chr3 (72-121)||(44085434-44085483)
chr3 (72-125)||(8735278-8735331)
chr3 (80-129)||(8735493-8735542)
chr3 (72-125)||(9087519-9087572)
chr3 (80-129)||(9087734-9087783)
chr3 (12-64)||(30721881-30721934)
[»] chr7 (22 HSPs)
chr7 (1-65)||(8154919-8154983)
chr7 (1-65)||(36629225-36629289)
chr7 (1-65)||(47202514-47202578)
chr7 (1-64)||(3936128-3936191)
chr7 (1-64)||(24042264-24042327)
chr7 (1-64)||(19225674-19225737)
chr7 (1-64)||(28230544-28230607)
chr7 (1-64)||(37518371-37518434)
chr7 (1-64)||(43737144-43737207)
chr7 (1-64)||(42925717-42925780)
chr7 (1-65)||(31643061-31643125)
chr7 (1-64)||(7115347-7115410)
chr7 (1-64)||(31985594-31985657)
chr7 (1-49)||(33574125-33574173)
chr7 (1-60)||(36408391-36408450)
chr7 (1-64)||(36468613-36468675)
chr7 (1-63)||(3304835-3304897)
chr7 (79-128)||(5730987-5731036)
chr7 (1-64)||(6467717-6467780)
chr7 (1-36)||(42877149-42877184)
chr7 (1-65)||(33151227-33151292)
chr7 (77-125)||(5731199-5731247)
[»] chr4 (27 HSPs)
chr4 (1-66)||(48319139-48319204)
chr4 (1-65)||(17933212-17933276)
chr4 (1-65)||(34972892-34972956)
chr4 (4-64)||(2506107-2506167)
chr4 (1-64)||(19835548-19835611)
chr4 (1-64)||(25491471-25491534)
chr4 (1-64)||(40703692-40703755)
chr4 (1-64)||(46440350-46440413)
chr4 (1-58)||(7931686-7931743)
chr4 (1-65)||(23523934-23523998)
chr4 (6-66)||(54631537-54631597)
chr4 (1-64)||(8106420-8106483)
chr4 (1-64)||(25752520-25752583)
chr4 (1-64)||(38536198-38536261)
chr4 (9-63)||(6003748-6003802)
chr4 (9-57)||(41413183-41413231)
chr4 (1-64)||(25539024-25539087)
chr4 (1-64)||(55052695-55052758)
chr4 (2-64)||(31582498-31582560)
chr4 (1-49)||(32441839-32441887)
chr4 (1-57)||(38416593-38416649)
chr4 (1-64)||(3703326-3703389)
chr4 (7-58)||(29822653-29822704)
chr4 (1-32)||(6228919-6228950)
chr4 (79-129)||(25140725-25140775)
chr4 (79-131)||(42660383-42660435)
chr4 (9-65)||(49397044-49397100)
[»] chr6 (18 HSPs)
chr6 (1-65)||(32035133-32035197)
chr6 (1-64)||(5699578-5699641)
chr6 (1-64)||(17264430-17264493)
chr6 (1-64)||(5638882-5638945)
chr6 (1-64)||(14587636-14587699)
chr6 (1-56)||(33413431-33413486)
chr6 (3-64)||(3717359-3717420)
chr6 (81-129)||(17500967-17501015)
chr6 (1-64)||(7412848-7412910)
chr6 (1-64)||(23406816-23406879)
chr6 (11-64)||(2813300-2813353)
chr6 (1-60)||(9905138-9905197)
chr6 (1-64)||(21517557-21517620)
chr6 (3-56)||(4508386-4508439)
chr6 (17-66)||(29289701-29289750)
chr6 (1-64)||(24604438-24604501)
chr6 (26-64)||(2539496-2539534)
chr6 (79-129)||(17501175-17501225)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-64)||(142039-142102)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-64)||(3471-3534)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-64)||(9573-9636)
[»] scaffold0016 (1 HSPs)
scaffold0016 (72-129)||(205816-205873)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-64)||(23142-23205)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 30829605 - 30829313
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgcaatccggattacgtaatccggacaac 100  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |    
T  30829605 aatagggcgcgttacatgatgttttcggattacataatccgaaaaccccctaaacacccttttttccatggtgcaatccaaattacgtaatccggacagc 30829506  T
Q  101 accagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgat 200  Q
    ||||||||| | ||| ||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30829505 accagcaccgattctgaacatgtttgtaaca---gtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgat 30829409  T
Q  201 tgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgttgaatc 299  Q
    ||||||||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30829408 tgaagtactttgttgtcttctgttaat---tgttctgtgtgacaagttgataaaatgacatattttgtgtatatgactaacctaaatctttgttgaatc 30829313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24471454 - 24471161
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccc-taaacaccattttttccatggtgcaatccggattacgtaatccggacaa 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||     
T  24471454 aatagggcgcgttacatgatgtttccggattacataatccgaaaacccccctaaacacccttttttccatggtgtaatccggattacgtaattcggacag 24471355  T
Q  100 caccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatga 199  Q
    |||||||| ||| ||| ||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24471354 caccagcatcaattctgaacatgtttgtaaca---gtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttcatgtatga 24471258  T
Q  200 ttgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgttgaatc 299  Q
    |||||||||||||||| |||||||||||   |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24471257 ttgaagtactttgttgtcttctgttaat---tgttctatgtgacaagttgataaaatgacatattttgtgtatatgactaacctaaatctttgttgaatc 24471161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43319335 - 43319201
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatgg------tgcaatccggattacgtaatccg 94  Q
    |||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||  |||||| |||||      |||||||||||||||||||||||    
T  43319335 aatatggcgcgttacatgattttttcggattacataatccgaaaaccccctaaacactctttttttcatggtgctgatgcaatccggattacgtaatccg 43319236  T
Q  95 gacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||| ||||| |||||| ||| |||||||||||||    
T  43319235 gacagcaccatcaccaattctgaacatgtttgtaa 43319201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33611549 - 33611485
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  33611549 aatagggcgcgttacatgatgtttccggattacataatctggaaaccccctaaacaccctttttt 33611485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 18583683 - 18583619
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||    
T  18583683 aatagggcgcgttacatgatgttttcggattacataatccggaaaccccctaaacaccttttttt 18583619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32817750 - 32817687
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||    
T  32817750 aatagggcgcattacatgatgtttccagattacataatccgaaaaccccctaaacacccttttt 32817687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 43319047 - 43318990
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  43319047 tgcaatccggattacgtaatctggacaacaccagcaccaattctgaacatgtttgtaa 43318990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49677503 - 49677560
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  49677503 aatagggcgcgttacatgatgtttccggattacataatccagaaaccccctaaacacc 49677560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17000398 - 17000461
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||| ||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  17000398 aatagggcacgttagatgatgtttctggattacataatccggaaaccccctaaacaccattttt 17000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28866770 - 28866707
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||| |||||    
T  28866770 aatagggcgcgctacatgatttttccggattacataatctgaacacccgctaaacacccttttt 28866707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34162860 - 34162797
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||| |||||    
T  34162860 aatagggcgtgttagatgatgtttccggattacataatccggaaaccccctaaacacccttttt 34162797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40650814 - 40650751
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||    
T  40650814 aatagggcgtgttacatgatgtttctggattacataatccggaaaccccttaaacaccattttt 40650751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 9445945 - 9445897
Alignment:
Q  80 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 128  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9445945 ggattacgtaatccggacaacaccagcaccaattctaaacatctttgta 9445897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38950289 - 38950361
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtg 73  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||| ||||||||||  |||||| |||||||    
T  38950289 aatagggcgcgttacatgattttttcagattacataatccgaaaactccctaaacactctttttttcatggtg 38950361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 40908061 - 40908009
Alignment:
Q  13 tacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  40908061 tacatgatgttttcggattacataatccgaaaaccccctaaacaccctttttt 40908009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49786289 - 49786352
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||    
T  49786289 aataggacgcgttacatgatgtttccggattacataatccggaaaccccc-aaacaccctttttt 49786352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42545987 - 42546050
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||| |||| |||||    
T  42545987 aataggacgcgttacatgatgtttccggataacatgatccgaaaaccccctaagcacccttttt 42546050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 800652 - 800603
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 128  Q
    |||||||||||||||||||||||||| |||||| || |||||||||||||    
T  800652 cggattacgtaatccggacaacaccaacaccaattcaaaacatgtttgta 800603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32542416 - 32542473
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||| |||||||||||||||| ||||||||||||||   ||||||||||||||||    
T  32542416 aatagggtgcgttacatgatgtttacggattacataatccagaaaccccctaaacacc 32542473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 7011233 - 7011293
Alignment:
Q  4 agggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||| || |  ||||| |||||||||||||||| |||||||    
T  7011233 agggcgcgttacatgatgtttccgaatcatgtaatccgaaaaccccctaaacatcattttt 7011293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15069981 - 15069917
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataat-ctgaaaaccccctaaacaccattttt 64  Q
    |||||| || |||||||||||||||||||||| ||||| | |||| |||||||||||||||||||    
T  15069981 aataggacgtgttacatgatgtttccggattatataatccggaaacccccctaaacaccattttt 15069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23442758 - 23442822
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||||||||||||||||||||||| |||||  | |||||||| ||||| | ||||||    
T  23442758 aatagggcgcgttacatgatgtttccggattatataattcggaaaccccccaaacatcttttttt 23442822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34006279 - 34006342
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| | |||||||| ||||||||||||||||| |||| ||||| |||||||| |||||    
T  34006279 aatagggcgggctacatgatttttccggattacataatttgaacaccccataaacacccttttt 34006342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44573235 - 44573172
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| ||| ||||| || |||||    
T  44573235 aatagggcgcgttacatgatgttttcggattacataatccggaaatcccttaaactcctttttt 44573172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45568015 - 45567952
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||| |||||||| |||  ||||||||| ||| |||||||||||||||||| |||||    
T  45568015 aatagggcgcgctacatgatatttttggattacatgatccgaaaaccccctaaacacccttttt 45567952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 45046979 - 45046933
Alignment:
Q  12 ttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||    
T  45046979 ttacatgatgtttccgaattacataatccggaaaccccctaaacacc 45046933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 41584799 - 41584754
Alignment:
Q  11 gttacatgatgtttccggattacataatctgaaaaccccctaaaca 56  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||    
T  41584799 gttacatgatgttttcggattacataatccggaaaccccctaaaca 41584754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 800941 - 800877
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||| |||  |||| ||| ||||||| | |||| ||| |||||||||||||||||||||    
T  800941 aatagggcgctttatttgattttttcggattatagaatccgaacaccccctaaacaccatttttt 800877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 38885251 - 38885310
Alignment:
Q  4 agggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| ||||||||||||||| | ||||||||||| | ||||||| |||||||| |||||    
T  38885251 agggcgtgttacatgatgtttcag-attacataatccggaaaccccttaaacacccttttt 38885310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 26319099 - 26319384
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgcaatccggattacgtaatccggacaac 100  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |    
T  26319099 aatagggtgcgttacatgatgtttccggattacataatccgaaaaccccctaaacacccttttttccatggtgcaatccggattacgtaatccgtacagc 26319198  T
Q  101 accagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgat 200  Q
    ||||||||||||||| ||||||||||   ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26319199 accagcaccaaatctgaacatgtttg---taacagtttcatatcacatttaccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgat 26319295  T
Q  201 tgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttg 292  Q
    ||||||||||||||  ||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26319296 tgaagtactttgttatcttctattaa---ttgttctgtgtgacaagttgataaaatgacatattttgtgtatatgactaacctaaatctttg 26319384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 37095054 - 37094758
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgcaatccggattacgtaatccggacaac 100  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||| ||| |    
T  37095054 aataaggcgcgttacatgatgtttccggattaccaaatccgaaaaccct-taaacacccttttttccatggtgcaatccggattacgtaatccgaacagc 37094956  T
Q  101 a------ccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatg 194  Q
    |      |||||||||| ||| ||||||||||||| |   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37094955 aactgcaccagcaccaattctgaacatgtttgtaaca---gtttcatatcacatttgctttcatgtattgttactagttctctttgtgcttgtgttgatg 37094859  T
Q  195 tatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgtt 294  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||  |||||||||||||||||||| | |||||||||||||||||||    
T  37094858 tatgattgaagtactttgttgtcttctgttaat---tgttctgtgtgacaagttga-taaatgacatattttgtgtatataactaacctaaatctttgtt 37094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15799207 - 15799270
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  15799207 aatagggcgcgttacatgatgtttccggattacataatccgaaaaccccctaaacacccttttt 15799270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24203823 - 24203759
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  24203823 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 24203759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 38640704 - 38640833
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgc------aatccggattacgtaatccg 94  Q
    |||||||||||||| ||||| | | |||||||||||||| ||| ||||| |||||||| |||||| ||||||||      ||||||||||||||||||||    
T  38640704 aatagggcgcgttaaatgatttattcggattacataatccgaacacccc-taaacaccctttttttcatggtgctgatgcaatccggattacgtaatccg 38640802  T
Q  95 gacaacaccagcaccaaatctaaacatgttt 125  Q
    |||| ||||| |||||| ||| |||||||||    
T  38640803 gacagcaccaacaccaattctgaacatgttt 38640833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36359725 - 36359608
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc-attttttccatgg------tgcaatccggattacgtaatcc 93  Q
    |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||  |||||| |||||      |||||||| |||||||||||||    
T  36359725 aataggacgcgtaacatgattttttcggattacataatctgaaaaccccctaaacacctttttttttcatggtgttgatgcaatccagattacgtaatcc 36359626  T
Q  94 ggacaacaccagcaccaa 111  Q
     |||||||||| ||||||    
T  36359625 agacaacaccatcaccaa 36359608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6156713 - 6156770
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  6156713 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacc 6156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25747007 - 25747071
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||    
T  25747007 aatagggcgcgttacatgatgttttcggattacataatccggaaatcccctaaacaccatttttt 25747071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14111879 - 14111942
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||||    
T  14111879 aatagggcgcgttacatgatgtttttggattacataatctgaaaatcccctaaacacccttttt 14111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29862594 - 29862657
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||||||    
T  29862594 aatagggcgcgttaggtgatgtttccggattacataatccggaaaccccctaaacaccattttt 29862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34440715 - 34440779
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  34440715 aataggacgcgttacatgatgttttcggattgcataatccgaaaaccccctaaacaccctttttt 34440779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4064859 - 4064796
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||| |||||    
T  4064859 aatagggcgtgttagatgatgtttccggattacataatccggaaaccccctaaacacccttttt 4064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20891595 - 20891658
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  20891595 aatagggcatgttacatgatgtttccgaattacataatccgaaaaccccctaaacacccttttt 20891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38871653 - 38871708
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaaca 56  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||    
T  38871653 aatagggggcgttacatgatgtttccggattacataatccgaaaaccctctaaaca 38871708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28083517 - 28083454
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| ||||||||| |||||||||||||||||| | |||||| ||||||||| |||||    
T  28083517 aatagggcgcattacatgatatttccggattacataatccggaaaccctctaaacacccttttt 28083454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31221478 - 31221415
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||| |||||||||||||||||||| ||||||||||||| | |||||| ||||||||| |||||    
T  31221478 aatatggcgcgttacatgatgtttctggattacataatccggaaaccctctaaacacccttttt 31221415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38692921 - 38692859
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||| |||||    
T  38692921 aatagggcgcgttacgtgatgtttccggattacataatccggaaa-cccctaaacacccttttt 38692859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39524758 - 39524821
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||||||||||||| |||||||||||||  | |||||||||||||||| |||||    
T  39524758 aatagggcgtgttacatgatgttttcggattacataattcggaaaccccctaaacacccttttt 39524821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40620129 - 40620066
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||| ||||| ||||||||| |||||||||||||| | |||||||||||||| |||||||    
T  40620129 aatagggcacgttatatgatgttttcggattacataatccggaaaccccctaaacatcattttt 40620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15957731 - 15957788
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||  ||||||||||||||||||||| |||||| | ||||||||||||||||    
T  15957731 aatagggcgtattacatgatgtttccggattaaataatccggaaaccccctaaacacc 15957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26190437 - 26190373
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||| |||||||||||||||| |||||||||||||    |||||||||||||||| ||||||    
T  26190437 aatagggtgcgttacatgatgttttcggattacataattcagaaaccccctaaacaccctttttt 26190373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8032253 - 8032316
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||| | ||||||||| |||||||||||||||||| ||| ||| |||||||||| |||||    
T  8032253 aatagggcacattacatgatttttccggattacataatccgaacacctcctaaacacccttttt 8032316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38372291 - 38372354
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||| |||| ||| |||||    
T  38372291 aatagggcgggttacatgatgtttccggattacataattcggaaaccccttaaatacccttttt 38372354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 28445465 - 28445415
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||||||| ||||||||| || ||| |||||||||||||    
T  28445465 cggattacgtaatccggacatcaccagcacgaattctgaacatgtttgtaa 28445415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33487592 - 33487649
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||||||| ||||||||| ||| |||||||||| | |||| |||||||||||    
T  33487592 aatagggcgcgttatatgatgttttcgggttacataatccggaaactccctaaacacc 33487649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37183921 - 37183856
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttc 66  Q
    |||||||| ||||||||||| ||| | |||||||||||| | |||||| ||||||||| |||||||    
T  37183921 aatagggcacgttacatgatattttcagattacataatccggaaaccctctaaacacccttttttc 37183856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12465245 - 12465185
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||| ||||||||||||||||||||||   |||| | ||| |||||||||||||||||||    
T  12465245 aatagggcgtgttacatgatgtttccggatta---aatccggaaa-cccctaaacaccatttttt 12465185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 16429133 - 16429183
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||  ||| ||||| |||||| |||||||||||||||||    
T  16429133 cggattacgtaatccaaacagcaccaacaccaattctaaacatgtttgtaa 16429183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 8739255 - 8739198
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||| |||||||||||||||  ||  |||||||||||| ||| |||||||||||||    
T  8739255 tgcaattcggattacgtaatccaaactgcaccagcaccaattctgaacatgtttgtaa 8739198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 38640988 - 38641045
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||||| ||||||| |||| |||||| ||||| |||||| ||| |||||||||||||    
T  38640988 tgcaatctggattacataattcggacagcaccaacaccaattctgaacatgtttgtaa 38641045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 33366954 - 33367231
Alignment:
Q  8 cgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt-ccatggtgcaatccggattacgtaatccggacaacaccagc 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||| | |||||||    
T  33366954 cgcgttacatgatatttccggattacataatccgaaaacccccttaacaccttttttttccatggtgcaaaccggattacgtaatccggatagcaccagc 33367053  T
Q  107 accaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagt 206  Q
    ||||| ||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33367054 accaattctgaacatgtttgtaat---agtttcatatcacatttgccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagt 33367150  T
Q  207 actttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgttgaatct 300  Q
    ||||||||   |||||||||   |||||||| ||||||||| || ||||||||||||          |||||||||||||||||||||||||||    
T  33367151 actttgttctattctgttaa---ttgttctgcgtgacaagtggataaaatgacatat----------tgactaacctaaatctttgttgaatct 33367231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 25715386 - 25715510
Alignment:
Q  2 atagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgc------aatccggattacgtaatccgg 95  Q
    |||||||||||||| |||| ||| |||||||||||||| ||| ||     |||||||||||||| ||||||||      |||||||||||||||||||||    
T  25715386 atagggcgcgttacctgattttttcggattacataatccgaacac-----aaacaccatttttttcatggtgctgatgcaatccggattacgtaatccgg 25715480  T
Q  96 acaacaccagcaccaaatctaaacatgttt 125  Q
    ||||||||| |||||| |||||||||||||    
T  25715481 acaacaccaacaccaattctaaacatgttt 25715510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15995247 - 15995184
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  15995247 aatagggcgcgttgcatgatgtttccggattacataatccgaaaaccccctaaacacccttttt 15995184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17474933 - 17474870
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  17474933 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacaattttt 17474870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42894397 - 42894460
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  42894397 aataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccattttt 42894460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45153925 - 45153862
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  45153925 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 45153862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36949079 - 36949018
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattt 62  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  36949079 aatagggcgcgttacatgatgttttcggattacataatccggaaaccccctaaacaccattt 36949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41510562 - 41510505
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  41510562 aatagggcgcgttacatgatgtttctggattacataatctggaaaccccctaaacacc 41510505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4268372 - 4268309
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  4268372 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccataaacacccttttt 4268309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32188003 - 32187940
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  32188003 aatagggcgagttacatgatgtttccggattacataatccggaaacccccgaaacaccattttt 32187940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 9847555 - 9847425
Alignment:
Q  5 gggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggtgc------aatccggattacgtaatccggaca 98  Q
    |||||||||||||||| ||| || ||||||||||| ||| |||  | ||||||| |||||| ||||||||      |||| ||||||||||||| |||||    
T  9847555 gggcgcgttacatgattttttcgtattacataatccgaacaccatccaaacaccttttttttcatggtgctgatgcaatctggattacgtaatctggaca 9847456  T
Q  99 acaccagcaccaaatctaaacatgtttgtaa 129  Q
     ||||| |||||| ||||||||| |||||||    
T  9847455 gcaccaacaccaattctaaacatatttgtaa 9847425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33452577 - 33452514
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||| |||||    
T  33452577 aatagggcgcgttacatgatgtttccggatcacataatccggaaactccctaaacacccttttt 33452514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36875005 - 36875068
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||| || ||||||||||||    
T  36875005 aataggacgcgttacatgatgtttccggattacataatccggaaaccctctgaacaccattttt 36875068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39447182 - 39447245
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||| |||||    
T  39447182 aatagggcgcattacatgatgttttcggattacataatctggaaaccccataaacacccttttt 39447245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 9847274 - 9847217
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||    
T  9847274 tgcaatccggattacgtaatctggacaacaccaacaccaattctgaacatgtttgtaa 9847217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41855033 - 41854970
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| | ||||||||||||||||||||||||| ||| | |||||||||||||||| |||||    
T  41855033 aatagggtgtgttacatgatgtttccggattacatgatccggaaaccccctaaacacccttttt 41854970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 25217924 - 25217868
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  25217924 aatagggtgcgttacatgatgtttccggattacataatccggaaa-cccctaaacacc 25217868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34517121 - 34517183
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||| |||| |||||||||||||  || ||||| ||||||||||||||    
T  34517121 aatagggcgcgttacatgatttttc-ggattacataatccaaataccccttaaacaccattttt 34517183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 44465862 - 44465798
Alignment:
Q  1 aatagggcgcgttacatgat-gtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||| ||||  |||||||||| || | |||||||||||||||| |||||    
T  44465862 aatagggcgcgttacatgatagtttatggattacatactccggaaaccccctaaacacccttttt 44465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 16705120 - 16704951
Alignment:
Q  129 ataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtg--cttgtgttgatgtatgattgaagtactttgttgccttctgttaa 226  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  16705120 ataacagtttcatatcacatttgccttcatgt-ttgttactagttctctttgtgtgcttgtgttggtgtatgattgaagtactttgttgtcttctattaa 16705022  T
Q  227 ttgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgttgaatct 300  Q
    |||||   |||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  16705021 ttgtt---ctgtgtgacaggttgataaaatgacatattttgtgtatatgactaacttaaatctttgttgaatct 16704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40994812 - 40994869
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40994812 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 40994869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 41530689 - 41530824
Alignment:
Q  1 aatagggcgcgttacatgatgtttc-cggattacataatctgaaaaccccctaaacaccattttttccatgg------tgcaatccggattacgtaatcc 93  Q
    |||||||||||||||||||| |||  | |||||||||||||||| |||||||||| ||| |||||| |||||      ||||||||||||||||||||||    
T  41530689 aatagggcgcgttacatgatttttttcagattacataatctgaacaccccctaaaaaccctttttttcatggtgctgttgcaatccggattacgtaatcc 41530788  T
Q  94 ggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||| ||||| |||||| | | |||||||||||||    
T  41530789 ggacatcaccatcaccaattttgaacatgtttgtaa 41530824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27928080 - 27928017
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  27928080 aatagggcgcgttacatgatgtttccggattacataatcaggaaaccccctaaacaccattttt 27928017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7971137 - 7971002
Alignment:
Q  1 aatagggcgcgttacatgatgtttcc-ggattacataatctgaaaaccccctaaacaccattttttccatggtgc------aatccggattacgtaatcc 93  Q
    |||||| |||| ||| |||||||| | |||||||||||||  || ||||| |||||||| |||||||||||||||      |||||||||||||||||||    
T  7971137 aataggacgcgctacgtgatgttttctggattacataatccaaacaccccataaacacccttttttccatggtgctgatgcaatccggattacgtaatcc 7971038  T
Q  94 ggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||| |||||||| ||| ||| |||||||||||||    
T  7971037 ggacagcaccagcatcaattctgaacatgtttgtaa 7971002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3094701 - 3094764
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  3094701 aatagggcgcattacatgatgtttccggattacataatccggaaaccccctaaacaccattttt 3094764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44106243 - 44106306
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  44106243 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 44106306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8885592 - 8885535
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  8885592 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacc 8885535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31520031 - 31519967
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  31520031 aatagagcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 31519967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37248578 - 37248641
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  37248578 aatagggcgcgttagatgatgtttccggattacataatccagaaaccccctaaacaccattttt 37248641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 24627603 - 24627723
Alignment:
Q  17 tgatgtttccggattacataatctgaaaaccccctaaacaccattttttc--catggtgc------aatccggattacgtaatccggacaacaccagcac 108  Q
    |||| ||| ||||||| | |||| ||| |||||||||||||||||||||   ||||||||      ||||||||||||||||||||||||||||||||||    
T  24627603 tgattttttcggattatagaatccgaataccccctaaacaccatttttttttcatggtgctgatgcaatccggattacgtaatccggacaacaccagcac 24627702  T
Q  109 caaatctaaacatgtttgtaa 129  Q
    ||| ||| || ||||||||||    
T  24627703 caattctgaatatgtttgtaa 24627723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21004410 - 21004473
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21004410 aataaggcgcgttacat-atgtttccggattacataatccgaaaactccctaaacaccatttttt 21004473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34853349 - 34853411
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||    
T  34853349 aatagggcgcgttacatgatgtttccggattaca-aatctggaaaccctctaaacacccttttt 34853411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 9073533 - 9073587
Alignment:
Q  10 cgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||| |||||    
T  9073533 cgttacatgatgtttccggattacataatccagaaaccccctaaacacctttttt 9073587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28916803 - 28916860
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||||||| |||||||||| ||||||||||| | | ||||||||||||||||    
T  28916803 aatagggcgcgttaaatgatgtttctggattacataaaccggaaaccccctaaacacc 28916860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 31234872 - 31234739
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggt------gcaatccggattacgtaatccg 94  Q
    ||||||||||| || || || ||| ||||||| | |||| ||| | |||||||||||||||||||| |||||      ||| | ||||||||||||||||    
T  31234872 aatagggcgcgctatataattttttcggattatagaatccgaacaacccctaaacaccattttttc-atggtactgatgcagttcggattacgtaatccg 31234774  T
Q  95 gacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||| ||| |||||||| ||| |||||||| ||||    
T  31234773 gacagcactagcaccaattctgaacatgttcgtaa 31234739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 31234578 - 31234528
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| |||||||    
T  31234578 cggattacgtaatccgaacaacaccagcaccaattctgaacatatttgtaa 31234528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35676677 - 35676620
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||| || ||||| |||||||||||||||||| ||| ||||||||| ||||    
T  35676677 aatagggcgcgctatatgatttttccggattacataatccgaacaccccctaaccacc 35676620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 42281016 - 42280967
Alignment:
Q  15 catgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||| |||||||||||| | |||||||||||||||| |||||    
T  42281016 catgatgtttccagattacataatccggaaaccccctaaacacccttttt 42280967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Complemental strand, 11698415 - 11698387
Alignment:
Q  11 gttacatgatgtttccggattacataatc 39  Q
    |||||||||||||||||||||||||||||    
T  11698415 gttacatgatgtttccggattacataatc 11698387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 45244409 - 45244539
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatgg------tgcaatccggattacgtaatccg 94  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||    ||||||| |||||| |||||      ||||||| |||||||||||||||    
T  45244409 aatagggcgcgttacatgattttttcggattacataatctgaaaacc----aaacaccctttttttcatggtgctgatgcaatctggattacgtaatccg 45244504  T
Q  95 gacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||| ||| |||||||| ||| |||||||||||||    
T  45244505 gacagcacgagcaccaattctgaacatgtttgtaa 45244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 32025003 - 32025139
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatggt------gcaatccggattacgtaatccg 94  Q
    ||||||||||  || ||||| ||| ||||||| | |||||||| ||||||||||||||||||||| ||||||      ||| | ||||||||||||| ||    
T  32025003 aatagggcgcactatatgattttttcggattatagaatctgaacaccccctaaacaccatttttttcatggtcctgatgcagttcggattacgtaattcg 32025102  T
Q  95 gacaacaccagcaccaaatctaaacatgtttgtaata 131  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  32025103 gacaacaccagcaccaattctgaacatgtttgtaata 32025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 35142096 - 35142158
Alignment:
Q  3 tagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  35142096 tagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccatttttt 35142158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46622923 - 46622860
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46622923 aataggacacgttacatgatgtttccggattacataatctggaaaccccctaaacaccattttt 46622860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47740071 - 47740008
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  47740071 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 47740008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 48304011 - 48304127
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttccatgg------tgcaatccggattacgtaatccg 94  Q
    ||||||| | |||||||||| ||| | |||||||||||| ||||||||||| ||||||||||||| |||||      ||||||||||||||||||||||     
T  48304011 aatagggtgtgttacatgattttttcagattacataatccgaaaaccccctcaacaccatttttttcatggtggtgatgcaatccggattacgtaatcca 48304110  T
Q  95 gacaacaccagcaccaa 111  Q
    |||| ||||| ||||||    
T  48304111 gacagcaccatcaccaa 48304127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47302039 - 47302103
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  47302039 aataaggcgcgttacatgatgtttccggattacataatccgaaaacctcctaaacaccctttttt 47302103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34821482 - 34821419
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  34821482 aatagagcgcgttacatgatgttttcggattacataatccggaaaccccctaaacaccattttt 34821419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39149829 - 39149892
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||||||    
T  39149829 aatagggcgcgttacatagtgtttccggattacataatccggaaaccccctaaacaccattttt 39149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 43473097 - 43473044
Alignment:
Q  12 ttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43473097 ttacatgatgtttccggattacataatccggaaaccccctaaacaccatttttt 43473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 501280 - 501216
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataat-ctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||    
T  501280 aatagggcgcgttacatgatgtttccggattgcataatccggaaaaccccctaaacacctttttt 501216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38977887 - 38977824
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||| |||||    
T  38977887 aatagggcgcgttacatggtgttttgggattacataatccgaaaaccccctaaacacctttttt 38977824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50716272 - 50716335
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||| |||||    
T  50716272 aatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaacacccttttt 50716335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50796575 - 50796512
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||| |||||    
T  50796575 aatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaacacccttttt 50796512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51258422 - 51258485
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||| || ||| |||||||||||||| ||| ||||||||||||||||||||    
T  51258422 aatagggcgcgttacataattttttcggattacataatccgaacaccccctaaacaccattttt 51258485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51540753 - 51540690
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||| |||||    
T  51540753 aatagggcgcgttacatgatgtttccgaattacataatccggaaaccccttaaacaccgttttt 51540690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3352205 - 3352148
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  3352205 aatagggtgcgttacatgatgtttccggattacataattcggaaaccccctaaacacc 3352148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28873023 - 28873087
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||| |||||||||| |||||||||||||||||||||  | ||||||||||||||| ||||||    
T  28873023 aataggacgcgttacattatgtttccggattacataatccaacaaccccctaaacaccctttttt 28873087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3902945 - 3902882
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||| ||||||||||||||||||  ||||||||||||| | |||||||||||||||| |||||    
T  3902945 aatagagcgcgttacatgatgtttttggattacataatccggaaaccccctaaacacccttttt 3902882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33438542 - 33438604
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||| |||||||||||||| || |||||| | |||||||||||||    
T  33438542 aatagggcgcgttacatgatgtt-ccggattacataatgtggaaaccctcaaaacaccattttt 33438604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 52777261 - 52777315
Alignment:
Q  12 ttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttc 66  Q
    |||||||||||||||||||||||||||  | |||||||||||||||| |||||||    
T  52777261 ttacatgatgtttccggattacataataaggaaaccccctaaacacccttttttc 52777315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 45244691 - 45244744
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 125  Q
    |||||||||||||||||||||||||||| |||| |||||| ||| |||||||||    
T  45244691 tgcaatccggattacgtaatccggacaataccatcaccaattctgaacatgttt 45244744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2358761 - 2358697
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||| |||||||||||||||||| |||||||||| | |||||| | ||||||| ||||||    
T  2358761 aatagggcgtgttacatgatgtttccggcttacataatccggaaaccctccaaacaccctttttt 2358697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3937408 - 3937458
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccct 51  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||| ||||    
T  3937408 aatagggcgcgttacatgatgtttctggattacataattcgaaaacaccct 3937458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 44085483 - 44085434
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacat 121  Q
    |||||||| ||||||||||||| |||||||| |||||||| |||||||||    
T  44085483 tgcaatccagattacgtaatccagacaacacaagcaccaattctaaacat 44085434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 8735278 - 8735331
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 125  Q
    |||||||| ||||||| ||| |||||| |||||||||||| ||| |||||||||    
T  8735278 tgcaatccagattacgaaattcggacagcaccagcaccaattctgaacatgttt 8735331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 8735493 - 8735542
Alignment:
Q  80 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||||||||| || |||||| | | |||||||||||||    
T  8735493 ggattacgtaatccggacaacatcaacaccaattatgaacatgtttgtaa 8735542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 9087519 - 9087572
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 125  Q
    |||||||| ||||||| ||| |||||| |||||||||||| ||| |||||||||    
T  9087519 tgcaatccagattacgaaattcggacagcaccagcaccaattctgaacatgttt 9087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 9087734 - 9087783
Alignment:
Q  80 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||||||||| || |||||| | | |||||||||||||    
T  9087734 ggattacgtaatccggacaacatcaacaccaattatgaacatgtttgtaa 9087783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 30721934 - 30721881
Alignment:
Q  12 ttacatgatgtttccggattacataatctgaaaac-cccctaaacaccattttt 64  Q
    ||||||||| ||| |||||||||||||| ||| || ||||||||||||||||||    
T  30721934 ttacatgattttttcggattacataatccgaacactcccctaaacaccattttt 30721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8154919 - 8154983
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  8154919 aatagggcgcgttacatgatgtttccggattacataatccgaaaaccccctaaacaccctttttt 8154983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36629225 - 36629289
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  36629225 aatagggcgcgttacatgatgtttccggattacataatctggaaaccctctaaacaccatttttt 36629289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47202514 - 47202578
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  47202514 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 47202578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3936128 - 3936191
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  3936128 aatagggcgcgttacatgatgtttccggattacataatccaaaaaccccctaaacacccttttt 3936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24042327 - 24042264
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  24042327 aataaggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccattttt 24042264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19225737 - 19225674
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  19225737 aatagggtgcgttacatgatgtttccggattacataatccggaaatcccctaaacaccattttt 19225674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28230607 - 28230544
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| |||||    
T  28230607 aatagggcgcgttacttgatgtttccggattacataatccggaaaccccctaaacacccttttt 28230544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37518434 - 37518371
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  37518434 aatagggcgtgttacatgaagtttccggattacataatccggaaaccccctaaacaccattttt 37518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43737144 - 43737207
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  43737144 aatagggcgcgttacatgatgttttcggattacataatccggaaaccccctaaacacccttttt 43737207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42925780 - 42925717
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||| |||||    
T  42925780 aatagggcgcattacatgatgttttcggattacataatccggaaaccccctaaacacctttttt 42925717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31643061 - 31643125
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||| | ||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||    
T  31643061 aatagggtgtgttacatgatgtttccggattacataatccggaaaccccccaaacaccctttttt 31643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7115410 - 7115347
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| ||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||    
T  7115410 aatagggtgcgttacttgattttttcgaattatataatctgaaaaccccctaaacaccattttt 7115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31985657 - 31985594
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||| ||| |||||||||||||  ||| ||||| ||||||||||||||    
T  31985657 aatagggcgcgttacatgattttttcggattacataattcgaacaccccttaaacaccattttt 31985594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33574173 - 33574125
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaacccc 49  Q
    ||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  33574173 aatagggtgcgttacatgatgttttcggattacataatccgaaaacccc 33574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36408391 - 36408450
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccat 60  Q
    |||| |||||| ||||||||||||||||||||||||||| | ||||| | ||||||||||    
T  36408391 aataaggcgcgatacatgatgtttccggattacataatccggaaacctcataaacaccat 36408450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36468675 - 36468613
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||||| | ||||||||||| | |||||||||||||||| |||||    
T  36468675 aatagggcgtgttacatgatgtttcag-attacataatccggaaaccccctaaacacccttttt 36468613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3304897 - 3304835
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttt 63  Q
    ||||||| | |||||||||| ||||||||||||||||||  ||||||||| ||||||| ||||    
T  3304897 aatagggtgtgttacatgatatttccggattacataatccaaaaaccccccaaacaccctttt 3304835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 5731036 - 5730987
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 128  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||||||||    
T  5731036 cggattacgtaatcaggacaccaccagcaacaattctaaacatgtttgta 5730987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6467717 - 6467780
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| | |||||||||| | | |||||||||||||| ||| |||||||||||||| |||||    
T  6467717 aatagggtgtgttacatgatttgttcggattacataatccgaacaccccctaaacacccttttt 6467780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42877184 - 42877149
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacata 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42877184 aatagggcgcgttacataatgtttccggattacata 42877149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33151227 - 33151292
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacac-catttttt 65  Q
    |||||||||| ||| ||||||| | |||||||||||||| | ||| ||||||||||| ||||||||    
T  33151227 aatagggcgcattatatgatgtcttcggattacataatccggaaatcccctaaacactcatttttt 33151292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 5731247 - 5731199
Alignment:
Q  77 tccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 125  Q
    |||||||||||||||| ||||| ||||| |||||| ||| |||||||||    
T  5731247 tccggattacgtaatcgggacagcaccaacaccaattctgaacatgttt 5731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48319204 - 48319139
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttc 66  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  48319204 aatagggcgcgttacatgatgtttctggattacataatccgaaaaccccctaaacacctttttttc 48319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17933276 - 17933212
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  17933276 aatagggcgcgttacatgatgtttccggattacataatctggaaaccccttaaacaccctttttt 17933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34972892 - 34972956
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  34972892 aatagggcgcgttacatgatgttttcggactacataatccgaaaaccccctaaacaccatttttt 34972956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 2506167 - 2506107
Alignment:
Q  4 agggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  2506167 agggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 2506107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19835548 - 19835611
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  19835548 aatagggtgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 19835611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25491534 - 25491471
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  25491534 aataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacacctttttt 25491471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40703692 - 40703755
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  40703692 aatagggtgcattacatgatgtttccggattacataacctgaaaaccccctaaacacccttttt 40703755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46440413 - 46440350
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  46440413 aataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 46440350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7931686 - 7931743
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  7931686 aatagggcgcgttacattatgtttccggattacataatccggaaaccccctaaacacc 7931743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23523934 - 23523998
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||| ||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||    
T  23523934 aataggacgcgttacatgatgtttccggattacataatccagaaaccccctaaacaccctttttt 23523998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 54631597 - 54631537
Alignment:
Q  6 ggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttttc 66  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||||    
T  54631597 ggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacatttttttc 54631537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8106420 - 8106483
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||| |||||||| |||||| ||||||||||| ||| ||||||||||||||||||||    
T  8106420 aatagggcgcgctacatgatttttccgtattacataatccgaacaccccctaaacaccattttt 8106483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25752583 - 25752520
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| |||||    
T  25752583 aatagggcgcattacatgatgtttccagattacataatccgaaaaccccataaacacccttttt 25752520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38536198 - 38536261
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||| |||||    
T  38536198 aatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaacacctttttt 38536261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 6003802 - 6003748
Alignment:
Q  9 gcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttt 63  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  6003802 gcgttacatgatgtttccggattacataatccggaaaccccctaaacaccttttt 6003748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 41413231 - 41413183
Alignment:
Q  9 gcgttacatgatgtttccggattacataatctgaaaaccccctaaacac 57  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41413231 gcgttacatgatgtttccggattacataatccggaaaccccctaaacac 41413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25539087 - 25539024
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||  ||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||    
T  25539087 aatagggcatgttacatgatgtttctggattacataatccggaaaccccctaaacactattttt 25539024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55052758 - 55052695
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| |||| ||||||||||||||||| |||||| | |||||||||||||||| |||||    
T  55052758 aatagggcgtgttagatgatgtttccggattatataatccggaaaccccctaaacacccttttt 55052695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 31582560 - 31582498
Alignment:
Q  2 atagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||| | |||||||||||| | |||||||||||||||| |||||    
T  31582560 atagggcgcattacatgatgttttctgattacataatccggaaaccccctaaacacccttttt 31582498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32441839 - 32441887
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaacccc 49  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  32441839 aatagcgcgcgttacatgatgtttccggattacataatccggaaacccc 32441887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38416593 - 38416649
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacac 57  Q
    |||||||| ||||||||||| ||| |||||||||||||| ||| |||||||||||||    
T  38416593 aatagggcacgttacatgattttttcggattacataatccgaacaccccctaaacac 38416649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3703389 - 3703326
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| || |||||||||| ||| |||||||||||||  ||| ||||||||||||||||||||    
T  3703389 aataggacgtgttacatgattttttcggattacataattcgaacaccccctaaacaccattttt 3703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 29822653 - 29822704
Alignment:
Q  7 gcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 58  Q
    |||||||||||||||||| |||||||||||||| | ||||||| ||||||||    
T  29822653 gcgcgttacatgatgttttcggattacataatccggaaaccccataaacacc 29822704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 6228950 - 6228919
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggatta 32  Q
    ||||||||||||||||||||||||||||||||    
T  6228950 aatagggcgcgttacatgatgtttccggatta 6228919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 25140775 - 25140725
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||| ||| || ||||||||| ||| |||||||||||||    
T  25140775 cggattacgtaatccgaacagcatcagcaccaattctgaacatgtttgtaa 25140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 42660435 - 42660383
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaata 131  Q
    ||||||| |||||||||| | |||||||||||| ||| | |||||||||||||    
T  42660435 cggattatgtaatccggatagcaccagcaccaattctgagcatgtttgtaata 42660383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 49397044 - 49397100
Alignment:
Q  9 gcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    |||||||| |||||||  ||||||||||||| ||||| ||| |||||| ||||||||    
T  49397044 gcgttacaagatgtttttggattacataatccgaaaatcccttaaacatcatttttt 49397100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32035133 - 32035197
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccatttttt 65  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  32035133 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 32035197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5699578 - 5699641
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  5699578 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 5699641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17264430 - 17264493
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  17264430 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 17264493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5638882 - 5638945
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||    
T  5638882 aatagggcgcgttacatgatgtttccggattacataatttgaaaaatccctaaacacccttttt 5638945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14587699 - 14587636
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||    
T  14587699 aatagggcgcgttacatgatgtttcctgattacataatccataaaccccctaaacaccattttt 14587636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33413486 - 33413431
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaaca 56  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  33413486 aatagggcgcgttacatgatgtttccagattacataatctggaaaccccctaaaca 33413431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 3717420 - 3717359
Alignment:
Q  3 tagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  3717420 tagggcgcgttacatgatgtttccggattatataatctggaaacctcctaaacacaattttt 3717359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 17500967 - 17501015
Alignment:
Q  81 gattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17500967 gattacgtaatccggacaacaccagcaccaaatctgaacatgtttgtaa 17501015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 7412848 - 7412910
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |||||    
T  7412848 aatagggcgtgttacatgatgtttccggattacataatccgaaaa-cccctaaacacccttttt 7412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23406816 - 23406879
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||  ||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  23406816 aatagggcgcgttagttgatgtttctggattacataatccggaaaccccctaaacaccattttt 23406879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 2813353 - 2813300
Alignment:
Q  11 gttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  2813353 gttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 2813300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9905138 - 9905197
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccat 60  Q
    ||||||||||| ||| |||| |||||||||||||||||| ||| ||||||||||| ||||    
T  9905138 aatagggcgcgctacgtgatttttccggattacataatccgaacaccccctaaacgccat 9905197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 21517620 - 21517557
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||| | ||||| ||||||||||||||||||||  | ||||||| ||||||||||||||    
T  21517620 aatagggcgtgctacataatgtttccggattacataattcggaaaccccttaaacaccattttt 21517557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 4508439 - 4508386
Alignment:
Q  3 tagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaaca 56  Q
    ||||||| |||||||||||||||||||||| |||||| | ||| ||||||||||    
T  4508439 tagggcgtgttacatgatgtttccggattatataatccggaaatcccctaaaca 4508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 29289750 - 29289701
Alignment:
Q  17 tgatgtttccggattacataatctgaaaaccccctaaacaccattttttc 66  Q
    |||| ||||||||||| |||||||||| ||||| ||||||||||||||||    
T  29289750 tgatttttccggattatataatctgaacaccccttaaacaccattttttc 29289701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24604501 - 24604438
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||  ||||||||| | | |||||||||||||| ||| ||||| ||||||||||||||    
T  24604501 aatagggcgtcttacatgatttcttcggattacataatccgaacaccccttaaacaccattttt 24604438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 2539496 - 2539534
Alignment:
Q  26 cggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  2539496 cggattacataatctggaaaccccctaaacacccttttt 2539534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 17501175 - 17501225
Alignment:
Q  79 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||||||| || ||| ||||| ||| |||||||||||||    
T  17501175 cggattacgtaatccggacagcatcaggaccaattctgaacatgtttgtaa 17501225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 142102 - 142039
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  142102 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 142039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3534 - 3471
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  3534 aatagggcgcgttacatgatgtttccggattacataatccggaaaccccataaacacccttttt 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9636 - 9573
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  9636 aataggacgcgttacatgatgtttccggattacataatccgaaaaccccctgaacacccttttt 9573  T

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Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 205873 - 205816
Alignment:
Q  72 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 129  Q
    |||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||    
T  205873 tgcaatccggattacgtaatccagacatcaccagcaccaattctgaacatgtttgtaa 205816  T

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Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23142 - 23205
Alignment:
Q  1 aatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacaccattttt 64  Q
    ||||||| || ||||||||||||||||||||| |||||| | |||||||||||||||| |||||    
T  23142 aatagggtgcattacatgatgtttccggattatataatccggaaaccccctaaacacctttttt 23205  T

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