View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_2 (Length: 645)
Name: NF11743_low_2
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 44789111 - 44789290
Alignment:
| Q |
147 |
gagactcaagtacctaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat |
246 |
Q |
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| T |
44789111 |
gagactcaaatatccaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat |
44789210 |
T |
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| Q |
247 |
agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcca |
326 |
Q |
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| T |
44789211 |
agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcca |
44789290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 328 - 546
Target Start/End: Original strand, 44789326 - 44789549
Alignment:
| Q |
328 |
cttacctgaattctgcaaattaatcaattaatttaggtactnnnnnnnntaatatat--cagggaaagaggaagatgaagaga--aggtaggatacgaac |
423 |
Q |
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| T |
44789326 |
cttacctgaattctgcaaattaatcaattaatttaggtactaaaaaaaataatatatatcagggaaagaggaagatgaagagagtaggtaggatacgaac |
44789425 |
T |
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| Q |
424 |
gagtaaacgtgagggtatgctcatt-gagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttt |
522 |
Q |
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| T |
44789426 |
gagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagatctaagacaaactcttg |
44789525 |
T |
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| Q |
523 |
agtaaatttaactactagctttga |
546 |
Q |
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| T |
44789526 |
agtaaatttatctattagctttga |
44789549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 44788564 - 44788691
Alignment:
| Q |
19 |
gatatcacaaataaaatcgatgttattgtcaaaagttgaaagtagcattaatgatttgctttctgttggttaatcagctatgactagttactttcagtta |
118 |
Q |
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| T |
44788564 |
gatatcacaaataaaatcgatgttattgtcaaaagttcaaagtagcattaatgatttgctttctgttggttaatcagctatgactagttactttcagtta |
44788663 |
T |
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| Q |
119 |
tgttagtgaatgattctgttagcttagt |
146 |
Q |
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| T |
44788664 |
tgttagtgaatgattctgttagcttagt |
44788691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 411 - 506
Target Start/End: Original strand, 44792961 - 44793056
Alignment:
| Q |
411 |
gtaggatacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
506 |
Q |
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| T |
44792961 |
gtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat |
44793056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 44797855 - 44797944
Alignment:
| Q |
417 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
506 |
Q |
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| T |
44797855 |
tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagat |
44797944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 44801250 - 44801334
Alignment:
| Q |
417 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagat |
501 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaagat |
44801334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 44805742 - 44805831
Alignment:
| Q |
417 |
tacgaacgagtaaacgtgagggtatgctcattgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat |
506 |
Q |
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| T |
44805742 |
tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagat |
44805831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 44792182 - 44792219
Alignment:
| Q |
280 |
ccacggaaatccagcggcgggaattgcagctgcgccta |
317 |
Q |
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| T |
44792182 |
ccacggaaatccagctgcgggaattgcggctgcgccta |
44792219 |
T |
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