View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_20 (Length: 303)
Name: NF11743_low_20
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 39496885 - 39496607
Alignment:
| Q |
19 |
gttgcaccatagaagcaacaccaaaggtgagtcaaaagattgttgttgcatcaacatttatgtaaacaacaatgttcaaggtgtcacaaattctgtgttg |
118 |
Q |
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| T |
39496885 |
gttgcaccatagaagcaacaacaaaggtgagtcaaaagattgttgttgcatcaacatttatgtaaacaacaatgttcaaggtgtcacaaattctgtgttg |
39496786 |
T |
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| Q |
119 |
catgatagtgaggttaggatgagagacccaggtgttagtatatattttgaagatttgaagtttgataaaggaattccctcttacagcaaaagattttgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39496785 |
catgatagtgaggttaggatgagagacccaggtgttagtatatattttgaagatttgaagtttgataaaggaattcccacttacagcaaaagattttgtt |
39496686 |
T |
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| Q |
219 |
ggggagataaatttggttattgtctctgcatattaattttgttattggctcttatttttctcttgttgcttcttctctc |
297 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
39496685 |
ggggagataaacttggttattgtctctgcatattaattttgttattggctcttatttttctcttggtgcttcttttctc |
39496607 |
T |
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