View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_21 (Length: 296)
Name: NF11743_low_21
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_21 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 27216144 - 27215849
Alignment:
| Q |
1 |
ctaatttatatagtattcggaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttataaaaaataaatattaggtttttaa |
100 |
Q |
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| T |
27216144 |
ctaatttatatagtattcgtaaaataaatagaaaactaatttatatagtaatatattagtattacaaagatcttagaaaaaataaatattaggtttttaa |
27216045 |
T |
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| Q |
101 |
agttaattttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatatcaacttcagannnnn |
200 |
Q |
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| T |
27216044 |
agttaattttatagggtagaatatgatgatgttgaatgattgctacacataaaattataagaaaatcatcaaacaacctcaatatcaacttcagattttt |
27215945 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnnngtaattttaataagtatatctaacactaaaatacgtacagcggaccaaagtactactnnnnnnnttatttgagacttttc |
296 |
Q |
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| T |
27215944 |
tttttctttcttttttgtaattttaatatgtatatctaacactaaaatacgtacaccggaccaaagtactactaaaaaaattatttgagacttttc |
27215849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 27222085 - 27222003
Alignment:
| Q |
39 |
atttatatagtaatatattagtattacaaagatcttataaaaaataaatattaggtttttaaagttaattttatagggtagaatat |
124 |
Q |
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| T |
27222085 |
atttatatagtaatatattagtaatacaaagatcttataaaa---aaatattaggtttttaaagttaattttacagtgtacaatat |
27222003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 27221960 - 27221871
Alignment:
| Q |
106 |
attttatagggtagaatatgatgatgttgaatgattgatgcacataaaattataagaaaatcatcaaacaacctcaatatcaacttcaga |
195 |
Q |
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| T |
27221960 |
attttatagtgtacaatgtgatgatgttgaatgatctatacacataaaattataagaaaatcctctaaaaacatcaatatcaacttcaga |
27221871 |
T |
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