View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11743_low_22 (Length: 291)

Name: NF11743_low_22
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11743_low_22
NF11743_low_22
[»] chr7 (4 HSPs)
chr7 (12-275)||(44521624-44521887)
chr7 (12-275)||(7282682-7282945)
chr7 (12-260)||(44233481-44233729)
chr7 (15-199)||(31430013-31430197)
[»] chr4 (5 HSPs)
chr4 (12-275)||(37112862-37113125)
chr4 (12-275)||(22197311-22197573)
chr4 (14-267)||(6453193-6453446)
chr4 (12-273)||(34014864-34015125)
chr4 (128-274)||(8684104-8684240)
[»] chr6 (2 HSPs)
chr6 (12-273)||(12335828-12336089)
chr6 (28-136)||(22022151-22022263)
[»] scaffold0385 (1 HSPs)
scaffold0385 (12-275)||(2922-3185)
[»] chr3 (2 HSPs)
chr3 (12-274)||(13014210-13014472)
chr3 (172-271)||(55339556-55339655)
[»] chr2 (4 HSPs)
chr2 (13-274)||(36964617-36964876)
chr2 (15-274)||(25599347-25599606)
chr2 (189-275)||(16238839-16238925)
chr2 (28-136)||(44332259-44332371)
[»] chr8 (2 HSPs)
chr8 (68-274)||(27420490-27420695)
chr8 (12-74)||(27420705-27420767)
[»] chr5 (1 HSPs)
chr5 (137-273)||(9064688-9064824)
[»] chr1 (1 HSPs)
chr1 (13-275)||(48477118-48477380)
[»] scaffold0343 (1 HSPs)
scaffold0343 (225-274)||(14062-14111)
[»] scaffold0019 (1 HSPs)
scaffold0019 (225-274)||(38629-38678)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 44521887 - 44521624
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44521887 agagaccattatcttcagtttggacatatggcgggtttaccccatttttcacattcttttttacagttaatttggctcgcttgtgtatggactacatgga 44521788  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44521787 aggagaggaacaatcgcatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctctttccagtggcttaaagctaggtt 44521688  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  44521687 gcattcttttgccttcagttaccatgactggtggcaacaccctatgtcttgtatgggtattttc 44521624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 7282945 - 7282682
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    ||||||||||   |||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||    
T  7282945 agagaccattgccttcagtttggacatatggcaggtttaccgcatttttcacattcttttttacagttaatttggctcgcttgtgtatggaccacttgga 7282846  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7282845 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattctagtggcttaaagctaggtt 7282746  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||||||||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  7282745 gcattcttttgccttcggttaccatgactggtggcaacaccctatgtcttgtatgggtattttc 7282682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 44233481 - 44233729
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| | |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||| |  ||||    
T  44233481 agagaccattatctccagtttggacatatggcaggtttaccgcatttttcacattcttttttacaattaatttggctggcttgtgtgtggacaatttgga 44233580  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    ||||||||||||| |||||||||| |||||||||||| ||| | | | || |||||||||||||||||||||| || ||| |||||||||||| ||||||    
T  44233581 aggagaggaacaaccacatttttaatcagaaggctacttcagtaaacgttatatctgacagagtgaaattactttctttctagtggcttaaagttaggtt 44233680  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtct 260  Q
    ||||   ||||  ||||||||||||||  |||||||| |||||||||||    
T  44233681 gcatatgtttgctttcagttaccatgactggtggcaataccctatgtct 44233729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 31430013 - 31430197
Alignment:
Q  15 gaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatggaagg 114  Q
    |||||||||||||||||||| ||| ||||  | ||| | || ||||||||||  ||  ||||  |||| ||||| |||||||| |||||||  |||| ||    
T  31430013 gaccattatattcagtttgggcatttggccaggttaccacaattttcacatttattcatacagataatctggctagcttgtgtttggactatttggacgg 31430112  T
Q  115 agaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggct 199  Q
    ||| ||||||||||||||||| ||| ||||||||  ||| || |||| || | ||||| |||||| |||| |||||| |||||||    
T  31430113 agatgaacaatcacatttttaatcacaaggctacgacaactaacattatagcagacagggtgaaactactttcattctagtggct 31430197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 37112862 - 37113125
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| |||||||||||||||||||  ||||| |||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  37112862 agagaccattatcttcagtttggacatatggcgggtttaccccatttttcacattcttttttgcagttaatttggctcgcttatgtatggactacatgga 37112961  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37112962 aggagaggaacaatcacatttttaatcagaagtctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 37113061  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  37113062 gcattcttttgccttcagttaccatgactggtggcaacaccctatgtcttgtatgggtattttc 37113125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 22197311 - 22197573
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||| | |||||||||||||||||||   |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22197311 agagaccattgtcttcagtttggacatatggcggatttaccccatttttcacattcttttttacagttaatttggctcgcttgtgtatggactacatgga 22197410  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22197411 aggagaggaacaatcgcttttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 22197510  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  22197511 gcattcttttgccttcagttaccatgactggtggcaaca-cctatgtcttgtatgggtattttc 22197573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 6453193 - 6453446
Alignment:
Q  14 agaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatggaag 113  Q
    |||||||||| |  |||| |||||||||||  | ||| | || |||||||||||||||||||| ||||||||||| || |||||  |||| |  ||||||    
T  6453193 agaccattatttctagttcggacatatggcgggattaccgcacttttcacattcttttttacagttaatttggctggcctgtgtgcggaccatttggaag 6453292  T
Q  114 gagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttgc 213  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  6453293 gagaggaataatcacatttttactcagaaggctacatccattggcattctatctgactgagtgaaattactctctttccagtggcttaaagctaggttgc 6453392  T
Q  214 attcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgg 267  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6453393 attcttttgccttcagttaccatgaccggtggcaacaccctatgtcttgtatgg 6453446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 34014864 - 34015125
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| ||||||||||| |||||||  ||||| | ||||||||||||||||||||||| |||||||| || |||||||| ||||| |  ||||    
T  34014864 agagaccattatcttcagtttggaaatatggcgggtttaccgcatttttcacattcttttttacagttaatttgcctggcttgtgtgtggaccatttgga 34014963  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    |||||||| |||| |||||||||| |||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  34014964 aggagagggacaaccacatttttaatcagaaggctgcatcaattagcatgatatctgacaaagtgaaattactctcattccagtggcttaaaactaggtt 34015063  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattt 273  Q
    |||||| ||||  ||||||||||||||  |||||||||||| || ||  |||||| ||||||    
T  34015064 gcattcgtttgctttcagttaccatgactggtggcaacaccgtaggtactgtatgagtattt 34015125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 8684240 - 8684104
Alignment:
Q  128 catttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttgcattcttttgtcttc 227  Q
    |||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||         
T  8684240 catttttactcagaaggctacatccattggtattctatctgacatagtgaaattactctcattctagtggtttaaaggtaggttgcattcttttg----- 8684146  T
Q  228 agttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
         ||||||| ||||||||||||||||||||||||||||||||||    
T  8684145 -----ccatgattggtggcaacaccctatgtcttgtatgggtatttt 8684104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 12335828 - 12336089
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| |||||||||||||||||||  ||||| | |||||||||||||||| |||||| ||||||||||| |||||||| ||||| |  ||||    
T  12335828 agagaccattatcttcagtttggacatatggcgggtttaacgcatttttcacattcttgtttacagttaatttggctggcttgtgtgtggaccatttgga 12335927  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||||||||||    
T  12335928 aggagaggaacaaccgcatttttaatcagaaggctacatcaattagcatgatacctgacaaagtgaaattactctcattccagtggcttaaagctaggtt 12336027  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattt 273  Q
    |||||| ||||  ||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  12336028 gcattcgtttgctttcagttaccatgactggtggcaacaccatatgtcttgtatgggtattt 12336089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 22022263 - 22022151
Alignment:
Q  28 agtttggacatatggcatgtttatcccatttttcacattctttttt----acaattaatttggctcgcttgtgtatggactacatggaaggagaggaaca 123  Q
    |||||| ||||||| |  ||||| | ||||||||||||||||||||    ||| |||||||||||||||||||| ||||| || ||||||||||||||||    
T  22022263 agtttgaacatatgacgggtttaccacatttttcacattcttttttttttacagttaatttggctcgcttgtgtgtggaccacttggaaggagaggaaca 22022164  T
Q  124 atcacatttttac 136  Q
    ||| || ||||||    
T  22022163 atcgcaattttac 22022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 3185 - 2922
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| ||| |||||||||||| ||  |||||   ||| ||||||||||||||||||| |||||||||||||||||||||||     | ||||    
T  3185 agagaccattatcttcggtttggacatattgcgggtttactgcatatttcacattcttttttacagttaatttggctcgcttgtgtatgctggtcttgga 3086  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||| ||||    
T  3085 aggagaggaacaatcacacttttactcataaggctacatcaattagcattctatccgacaaagtgaaattactctcattccaatagcttaaagctgggtt 2986  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||||||||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  2985 gcattcttttgccttcagttaccatgactggtggcaacaccctatgtcttgtatgagtattttc 2922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 13014472 - 13014210
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatgga 111  Q
    |||||||||||| |||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||| |  ||||    
T  13014472 agagaccattatcttcagtttggacatatggcgggtttaccgcatttttcacattcttttttacaattaatttggcttgcttgtgtgtggacgatttgga 13014373  T
Q  112 aggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggtt 211  Q
    | ||||||||||| |||||||||| ||| |||||||| ||||||||| || ||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  13014372 atgagaggaacaaccacatttttaatcaaaaggctacttcaattagcgttatatttgacagagtgaaattactttcattcgagtggcttaaagctaggtt 13014273  T
Q  212 gcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
    ||||   ||||  |||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  13014272 gcatatgtttgctttcagttaccctgactggtggcaacaccctatgtcttgtatgggtatttt 13014210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 55339655 - 55339556
Alignment:
Q  172 gagtgaaattactctcattccagtggcttaaagctaggttgcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtat 271  Q
    |||||||||||||||||||||||||||| ||||| |   | |||   ||||  |||| ||| |||||  |||||||||||||||||||||||||||||||    
T  55339655 gagtgaaattactctcattccagtggctaaaagccaaactacatgtgtttgctttcaattatcatgactggtggcaacaccctatgtcttgtatgggtat 55339556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 36964876 - 36964617
Alignment:
Q  13 gagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatggaa 112  Q
    ||||||||||| ||||||||| |||||||||  ||||| | ||||||||||||||||||||||| |||||||| || |||||||| ||||| |  |||||    
T  36964876 gagaccattatcttcagtttgaacatatggcgggtttaccgcatttttcacattcttttttacagttaatttgactggcttgtgtgtggacaatttggaa 36964777  T
Q  113 ggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttg 212  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||| ||  |||||| ||||||||| |||| ||||| |||||||||||||||||||||    
T  36964776 ggagaggaacaaccacatttttaatcagaaggctacttcaattagcgttaaatctgatagagtgaaagtactttcatttcagtggcttaaagctaggttg 36964677  T
Q  213 cattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
    |||   ||||  ||||||||||||||  | ||||||||  ||||||||||||||||||||||    
T  36964676 catatgtttgctttcagttaccatgactgatggcaaca--ctatgtcttgtatgggtatttt 36964617  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 25599606 - 25599347
Alignment:
Q  15 gaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatggaagg 114  Q
    ||||||||| |||||||||| ||||||||  | |||   ||||||||||| ||||||||||| ||||||||| | ||||| || ||||| |  |||||||    
T  25599606 gaccattatcttcagtttgggcatatggcgggcttacgacatttttcacaatcttttttacagttaatttggttggcttgcgtgtggacaatttggaagg 25599507  T
Q  115 agaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttgca 214  Q
    ||||||||||  ||||||||| |||||||||||||||||||||| |  ||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  25599506 agaggaacaactacatttttaatcagaaggctacatcaattagcgtcatatctgacaaagtgaaattactttcattccagtggcttaaagctaggttgca 25599407  T
Q  215 ttcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
    |   ||||  | ||||||||||||   |||||||||||||||||||||||||||||||||    
T  25599406 tatgtttgcttgcagttaccatgactagtggcaacaccctatgtcttgtatgggtatttt 25599347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 16238925 - 16238839
Alignment:
Q  189 ttccagtggcttaaagctaggttgcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||   ||||||||||||||||||||||||||||||||||    
T  16238925 ttccactggcttaaagctaggttgcattcttttgccttcagttatcatgactagtggcaacaccctatgtcttgtatgggtattttc 16238839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 44332371 - 44332259
Alignment:
Q  28 agtttggacatatggcatgtttatcccatttttcacattctttttt----acaattaatttggctcgcttgtgtatggactacatggaaggagaggaaca 123  Q
    |||||| ||||||| |  ||||| | ||||||||||||||||||||    ||| |||||||||||||||||||| ||||| || ||||||||||||||||    
T  44332371 agtttgaacatatgacgggtttaccacatttttcacattcttttttttttacagttaatttggctcgcttgtgtgtggaccacttggaaggagaggaaca 44332272  T
Q  124 atcacatttttac 136  Q
    ||| || ||||||    
T  44332271 atcgcaattttac 44332259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 68 - 274
Target Start/End: Complemental strand, 27420695 - 27420490
Alignment:
Q  68 ttttttacaattaatttggctcgcttgtgtatggactacatggaaggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatct 167  Q
    ||||||||| ||||||||||| |||| ||| || || |  ||||||||||||||||| |||||||||| |||||||||||||||||||||| || | |||    
T  27420695 ttttttacagttaatttggctggcttatgtgtgaacaatttggaaggagaggaacaaccacatttttaatcagaaggctacatcaattagcgttatgtct 27420596  T
Q  168 gacagagtgaaattactctcattccagtggcttaaagctaggttgcattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgg 267  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||||||||||  ||||||||| | ||| ||||||||||    
T  27420595 gacagagtgaaattactttcattccagtggcttaaagctaggttgcatatgtttgttttcagttaccatgat-tgtggcaacaacttatatcttgtatgg 27420497  T
Q  268 gtatttt 274  Q
    |||||||    
T  27420496 gtatttt 27420490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27420767 - 27420705
Alignment:
Q  12 agagaccattatattcagtttggacatatggcatgtttatcccatttttcacattctttttta 74  Q
    |||||||||||| || ||||||||||||||||  ||||| | ||||||| |||||||||||||    
T  27420767 agagaccattatctttagtttggacatatggcgggtttaccgcattttttacattctttttta 27420705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 9064824 - 9064688
Alignment:
Q  137 tcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttgcattcttttgtcttcagttaccat 236  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  9064824 tcagaaggctacatcaattaggatgatatctgacaaagtgaaattactctcattccagtggcttaaagctaggttgcattcgtttgctttcagttaccat 9064725  T
Q  237 gatcggtggcaacaccctatgtcttgtatgggtattt 273  Q
    ||  |||||||||||||||||||||||||||||||||    
T  9064724 gactggtggcaacaccctatgtcttgtatgggtattt 9064688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 48477380 - 48477118
Alignment:
Q  13 gagaccattatattcagtttggacatatggcatgtttatcccatttttcacattcttttttacaattaatttggctcgcttgtgtatggactacatggaa 112  Q
    ||||||||||| |||||||||| ||| ||||  | ||| | |||||||||||||||||||||||  |||| ||||| |||||||  ||||| |  |||||    
T  48477380 gagaccattatcttcagtttgggcatttggctggattaccgcatttttcacattcttttttacatataatatggctggcttgtgcttggaccatttggaa 48477281  T
Q  113 ggagaggaacaatcacatttttactcagaaggctacatcaattagcattctatctgacagagtgaaattactctcattccagtggcttaaagctaggttg 212  Q
    |||||| |||||||||||||||| |||||| ||||||||||||| || | || | ||||  |||||| |||| ||||| || ||||| |||||||  ||     
T  48477280 ggagagaaacaatcacatttttaatcagaatgctacatcaattaacaatatagcagacatggtgaaactactttcatttcactggctaaaagctaattta 48477181  T
Q  213 cattcttttgtcttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtattttc 275  Q
    ||||| ||||  || |||||||||||  ||||||||||| |||| ||||| ||| ||||||||    
T  48477180 cattcgtttgctttgagttaccatgactggtggcaacactctatatcttgaatgagtattttc 48477118  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 14111 - 14062
Alignment:
Q  225 ttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||    
T  14111 ttcagttaccatgactggtggcaacaccctatatcttgtatgggtatttt 14062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 38678 - 38629
Alignment:
Q  225 ttcagttaccatgatcggtggcaacaccctatgtcttgtatgggtatttt 274  Q
    ||||||||||||||  ||||| |||||||||||||||||||| |||||||    
T  38678 ttcagttaccatgacaggtggtaacaccctatgtcttgtatgagtatttt 38629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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