View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_25 (Length: 251)
Name: NF11743_low_25
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_25 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold1526 (2 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 53391 - 53268
Alignment:
| Q |
116 |
atacttatctaatcttggttgtagatttatctctattcttgactggctcctctttgttgttgatatctaagctctaatccaggtaactaatgacggtttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53391 |
atacttatctaatcttggttgtagatttatctctgttcttgactggctcctctttgttgttgatatctaagctctaatccaggtaaccaatgacggtttg |
53292 |
T |
|
| Q |
216 |
atttaatcatatgt-ttttattct |
238 |
Q |
| |
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|||||||||||||| ||||||||| |
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| T |
53291 |
atttaatcatatgtgttttattct |
53268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 53512 - 53444
Alignment:
| Q |
1 |
tttgatgagctctatgactgactggtcatactaatttagaaatttaatgaattttgggttataagttca |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53512 |
tttgatgagctctatgactgactggtcatactaatttagaaatttaatgaattttgggttataagttca |
53444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 686 - 576
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttgatatctaagctcta-------atccaggtaactaatgacggtttgatttaatcatatgt-tttt |
233 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| |
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| T |
686 |
ttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtgtttt |
587 |
T |
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| Q |
234 |
attctctgctt |
244 |
Q |
| |
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||||| ||||| |
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| T |
586 |
attctttgctt |
576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 783 - 750
Alignment:
| Q |
19 |
tgactggtcatactaatttagaaatttaatgaat |
52 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
783 |
tgacgggtcatactaatttagaaatttaatgaat |
750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 44496093 - 44496203
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttgatatctaagctcta-------atccaggtaactaatgacggtttgatttaatcatatgt-tttt |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| |
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| T |
44496093 |
ttatctctattcttgactgactcctctttgttgttgatatctaagctctaagttgatatctaggtaaccaatgatggtttgatttaatcatatgtgtttt |
44496192 |
T |
|
| Q |
234 |
attctctgctt |
244 |
Q |
| |
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||||| ||||| |
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| T |
44496193 |
attctttgctt |
44496203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 44495996 - 44496029
Alignment:
| Q |
19 |
tgactggtcatactaatttagaaatttaatgaat |
52 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
44495996 |
tgacgggtcatactaatttagaaatttaatgaat |
44496029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 3378845 - 3378895
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttgatatctaagctctaa |
192 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3378845 |
ttatctctattcttgactgactcctctttgttgttgatatctaagctctaa |
3378895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 3378748 - 3378781
Alignment:
| Q |
19 |
tgactggtcatactaatttagaaatttaatgaat |
52 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
3378748 |
tgacgggtcatactaatttagaaatttaatgaat |
3378781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 28335879 - 28335822
Alignment:
| Q |
120 |
ttatctaatcttggttgtagatttatctctattcttgactggctcctctttgttgttg |
177 |
Q |
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|
||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
28335879 |
ttatctaattttggttgtagatttatctatattcttgactgacttctctttgttgttg |
28335822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 44787834 - 44787777
Alignment:
| Q |
120 |
ttatctaatcttggttgtagatttatctctattcttgactggctcctctttgttgttg |
177 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
44787834 |
ttatctaattttggttgtagatttatctatattcttgactgacttctctttgttgttg |
44787777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 4691 - 4726
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttg |
177 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
4691 |
ttatctctattcttgactgactcctctttgttgttg |
4726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 14603 - 14638
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttg |
177 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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| T |
14603 |
ttatctctattcttgactgactcctctttgttgttg |
14638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 24378 - 24343
Alignment:
| Q |
142 |
ttatctctattcttgactggctcctctttgttgttg |
177 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
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|
| T |
24378 |
ttatctctattcttgactgactcctctttgttgttg |
24343 |
T |
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