View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11743_low_3 (Length: 612)

Name: NF11743_low_3
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11743_low_3
NF11743_low_3
[»] scaffold0005 (3 HSPs)
scaffold0005 (203-415)||(230832-231042)
scaffold0005 (84-211)||(230520-230647)
scaffold0005 (492-605)||(231123-231235)
[»] chr4 (7 HSPs)
chr4 (203-415)||(14586332-14586542)
chr4 (39-209)||(26720237-26720407)
chr4 (84-211)||(14586727-14586854)
chr4 (62-341)||(3649906-3650181)
chr4 (492-605)||(14586139-14586251)
chr4 (39-73)||(32651290-32651324)
chr4 (39-73)||(38467731-38467765)
[»] chr6 (3 HSPs)
chr6 (39-191)||(27444127-27444279)
chr6 (62-341)||(33053905-33054182)
chr6 (39-73)||(31444771-31444805)
[»] scaffold0003 (2 HSPs)
scaffold0003 (39-191)||(43082-43234)
scaffold0003 (62-191)||(36898-37027)
[»] chr3 (6 HSPs)
chr3 (65-191)||(31687908-31688034)
chr3 (118-191)||(31896833-31896906)
chr3 (118-191)||(31912542-31912615)
chr3 (118-191)||(31946190-31946263)
chr3 (62-108)||(19766049-19766095)
chr3 (35-73)||(46233983-46234021)
[»] scaffold0152 (1 HSPs)
scaffold0152 (62-130)||(10230-10298)
[»] scaffold0014 (1 HSPs)
scaffold0014 (39-108)||(32615-32684)
[»] chr8 (3 HSPs)
chr8 (37-73)||(44663703-44663739)
chr8 (62-101)||(19962065-19962104)
chr8 (37-73)||(35348989-35349025)
[»] chr1 (3 HSPs)
chr1 (38-74)||(31771393-31771429)
chr1 (39-73)||(32440669-32440703)
chr1 (38-74)||(7608405-7608441)
[»] chr2 (2 HSPs)
chr2 (39-73)||(4453778-4453812)
chr2 (39-73)||(9208570-9208604)
[»] chr7 (1 HSPs)
chr7 (37-73)||(21820194-21820230)


Alignment Details
Target: scaffold0005 (Bit Score: 158; Significance: 9e-84; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 203 - 415
Target Start/End: Original strand, 230832 - 231042
Alignment:
Q  203 tttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttccaccttctctcatcacatttaattggcttatacttttccatgt 302  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||     
T  230832 tttcaaattttccctccttgccttaggt--cacttaacgcattgtgtgcttgctttccaccttcccttatcacattaaattgacttatacttttccatgc 230929  T
Q  303 atctgtgttttaccaatgcaaggtgtttttatggcatattacaaaaaacaacgggcattgaaactttcagacttcaaatcacatttgacttggattcctt 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  230930 atctgtgttttaccaatgcaaggtgcttttatggcatattacaaaaaacaacgggcattgaaaccctcagacttcaaatcacatttggcttggattcctt 231029  T
Q  403 caattgaatatca 415  Q
    |||||||||||||    
T  231030 caattgaatatca 231042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 230520 - 230647
Alignment:
Q  84 tacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaa 183  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||  ||||| || ||||||    
T  230520 tacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgctgactagcacaa 230619  T
Q  184 atcacaatgcacacttcaatttcaaatt 211  Q
    |||||||| |||||||||||||||||||    
T  230620 atcacaatacacacttcaatttcaaatt 230647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 605
Target Start/End: Original strand, 231123 - 231235
Alignment:
Q  492 tccctcatgaa-cccacccctctcttacaacatgaaatttttccccccgatccctgccactccttcatcgttggttgccacactcatactcttctacgtc 590  Q
    ||||||||||| |||||||||||||| |||| || |||||||||  || |  ||||||||| ||||| | |||||||||||  |||||||||| ||||||    
T  231123 tccctcatgaatcccacccctctctttcaacgtgcaatttttccatccaacacctgccacttcttcaccattggttgccac--tcatactcttttacgtc 231220  T
Q  591 atcgttttcatctct 605  Q
    ||| |||||| ||||    
T  231221 atccttttcaactct 231235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 203 - 415
Target Start/End: Complemental strand, 14586542 - 14586332
Alignment:
Q  203 tttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttccaccttctctcatcacatttaattggcttatacttttccatgt 302  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||     
T  14586542 tttcaaattttccctccttgccttaggt--cacttaacgcattgtgtgcttgctttccaccttcccttatcacattaaattgacttatacttttccatgc 14586445  T
Q  303 atctgtgttttaccaatgcaaggtgtttttatggcatattacaaaaaacaacgggcattgaaactttcagacttcaaatcacatttgacttggattcctt 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  14586444 atctgtgttttaccaatgcaaggtgcttttatggcatattacaaaaaacaacgggcattgaaaccctcagacttcaaatcacatttggcttggattcctt 14586345  T
Q  403 caattgaatatca 415  Q
    |||||||||||||    
T  14586344 caattgaatatca 14586332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 26720237 - 26720407
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 138  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  26720237 atctaacttattcctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcacca 26720336  T
Q  139 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaa 209  Q
    ||||||||||||   || |||| ||||||||| ||||| |||||||||||||| |||||||||||||||||    
T  26720337 cttatttatcagccatagatctaatcttgctgttggctagcacaaatcacaatacacacttcaatttcaaa 26720407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 14586854 - 14586727
Alignment:
Q  84 tacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaa 183  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||  ||||| || ||||||    
T  14586854 tacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccgtagatctgatctttttgctgactagcacaa 14586755  T
Q  184 atcacaatgcacacttcaatttcaaatt 211  Q
    |||||||| |||||||||||||||||||    
T  14586754 atcacaatacacacttcaatttcaaatt 14586727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 341
Target Start/End: Original strand, 3649906 - 3650181
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 161  Q
    ||||||||  ||||||||| | |||||||||||||||||| |||||||| ||||| |||| ||| ||||||| ||| |||| |||| |    || |||||    
T  3649906 ttaacacttaaaaccctaaatctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggtgccgcttaattatgaaccctacatctg 3650005  T
Q  162 atcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttcca 261  Q
    |||||| |  ||||| |||||||||||||  |||||         ||| ||||||||||||||||| |   ||| ||||||| | ||||||| |||||||    
T  3650006 atcttgtttatggctagcacaaatcacaa--cacacgg-------aaaatttccctccttgccttacgc--cacataatgcagtctgtgcttcctttcca 3650094  T
Q  262 c-------cttctctcatcacatttaattggcttatacttttccatgtatctgtgttttaccaatgcaaggtgtttttatggcatat 341  Q
            |||| || |||||||| |||||||||||||||| ||||| || |||||| ||||||||||||||| ||| |||||||||    
T  3650095 agttccaacttcccttatcacattaaattggcttatactttcccatgcatatgtgttgtaccaatgcaaggtgctttcatggcatat 3650181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 605
Target Start/End: Complemental strand, 14586251 - 14586139
Alignment:
Q  492 tccctcatgaa-cccacccctctcttacaacatgaaatttttccccccgatccctgccactccttcatcgttggttgccacactcatactcttctacgtc 590  Q
    ||||||||||| |||||||||||||| |||| || |||||||||  || |  ||||||||| ||||| | |||||||||||  |||||||||| ||||||    
T  14586251 tccctcatgaatcccacccctctctttcaacgtgcaatttttccatccaacacctgccacttcttcaccattggttgccac--tcatactcttttacgtc 14586154  T
Q  591 atcgttttcatctct 605  Q
    ||| |||||| ||||    
T  14586153 atccttttcaactct 14586139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 32651324 - 32651290
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  32651324 atctaacttattcctaatcctagttaacactccaa 32651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 38467765 - 38467731
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    |||||||||||| ||||||||||||||||||||||    
T  38467765 atctaacttatttataatcctagttaacactccaa 38467731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 27444127 - 27444279
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 138  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27444127 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgcca 27444226  T
Q  139 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||||||   || |||||||||||||||||||||||||||||||||||    
T  27444227 cttatttatcagccatagatctgatcttgctgctggctggcacaaatcacaat 27444279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 33054182 - 33053905
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 161  Q
    ||||||||  |||||||||   |||||||||||||||||| |||||||| ||||| |||| ||| |||||||| ||||||| |||| ||   || ||||     
T  33054182 ttaacacttaaaaccctaaacctacttttttaggcgccaatcaatcctaacccttggatcaacatctttgggcaccacttaattatgagccctacatcta 33054083  T
Q  162 atcttgctgctggctggcacaaatcacaatgcacacttcaatttcaaattttccctccttgccttatgtgtcacttaatgcattgtgtgcttgctttcca 261  Q
    ||||||||  ||||| |||||||||||||  |||     | ||||||||||||||||||| ||||| |   ||| |||||||   ||||||| |||||||    
T  33054082 atcttgcttatggctagcacaaatcacaacacacggaaaattttcaaattttccctccttaccttacgc--cacataatgcagactgtgcttcctttcca 33053985  T
Q  262 ccttctctcatcacatttaattggcttatacttttccatgtatctgtgttttaccaatgcaaggtgtttttatggcatat 341  Q
     |||| || |||||||| |||||||||||||||| ||||  || |||||| ||||||||||||||| |||||||||||||    
T  33053984 acttcccttatcacattaaattggcttatactttcccatacatatgtgttgtaccaatgcaaggtgcttttatggcatat 33053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 31444771 - 31444805
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  31444771 atctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 39 - 191
Target Start/End: Complemental strand, 43234 - 43082
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgcca 138  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43234 atctaacttattcctaatcgtagttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgcca 43135  T
Q  139 cttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||||||   || |||||||||||||||||||| ||||||||||||||    
T  43134 cttatttatcagccatagatctgatcttgctgctggcttgcacaaatcacaat 43082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 37027 - 36898
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctg 161  Q
    |||||||| |||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||   || |||||    
T  37027 ttaacacttcaaatcctaattcttcttttttaggcgccaaacaatcctagcccttggatctacacctttggttgccacttatttatcagccatagatctg 36928  T
Q  162 atcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||| ||||| ||||||||||||||    
T  36927 atcttgctgatggctagcacaaatcacaat 36898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 31687908 - 31688034
Alignment:
Q  65 acactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacacctttgggcgccacttatttatcagttgtaaatctgatc 164  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   || ||||||||    
T  31687908 acactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacacctttgggcgccacttatttatcagccatagatctgatc 31688007  T
Q  165 ttgctgctggctggcacaaatcacaat 191  Q
    |||||||||||| ||||||||||||||    
T  31688008 ttgctgctggctagcacaaatcacaat 31688034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 31896906 - 31896833
Alignment:
Q  118 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31896906 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31896833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 31912615 - 31912542
Alignment:
Q  118 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31912615 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31912542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 31946263 - 31946190
Alignment:
Q  118 gatctacacctttgggcgccacttatttatcagttgtaaatctgatcttgctgctggctggcacaaatcacaat 191  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||| ||||||||||||||    
T  31946263 gatctacacctttgggcgccacttatttatcacccatagatctgatcttgctgctggctagcacaaatcacaat 31946190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 19766049 - 19766095
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 108  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||    
T  19766049 ttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 19766095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 46234021 - 46233983
Alignment:
Q  35 agttatctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46234021 agttatctaacttattcctaatcctagttaacactccaa 46233983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 10230 - 10298
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaaacaatcctagcccttagatctacaccttt 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  10230 ttaacactccaaaccctaattctacttttttaggcgccaaacaatcctagcccttggatctacaccttt 10298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 32615 - 32684
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaaaccctaattttacttttttaggcgccaaacaatcc 108  Q
    ||||||||||||  |||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32615 atctaacttatttctaatcctagttaacactccaaaccctaatcctacttttttaggcgccaaacaatcc 32684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 44663739 - 44663703
Alignment:
Q  37 ttatctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||||| |||||||||||||||||||||    
T  44663739 ttatctaacttattcctaatcctagttaacactccaa 44663703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 19962065 - 19962104
Alignment:
Q  62 ttaacactccaaaccctaattttacttttttaggcgccaa 101  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  19962065 ttaacacttaaaaccctaattttacttttttaggcgccaa 19962104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 35348989 - 35349025
Alignment:
Q  37 ttatctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35348989 ttatctaacttatttctaatcctagttaacactccaa 35349025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 31771429 - 31771393
Alignment:
Q  38 tatctaacttattcataatcctagttaacactccaaa 74  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31771429 tatctaacttattcctaatcctagttaacactccaaa 31771393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 32440703 - 32440669
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  32440703 atctaacttattcctaatcctagttaacactccaa 32440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 7608441 - 7608405
Alignment:
Q  38 tatctaacttattcataatcctagttaacactccaaa 74  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  7608441 tatctaacttattcctaatcctagttaaaactccaaa 7608405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 4453778 - 4453812
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  4453778 atctaacttattcctaatcctagttaacactccaa 4453812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 9208570 - 9208604
Alignment:
Q  39 atctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||| |||||||||||||||||||||    
T  9208570 atctaacttattcctaatcctagttaacactccaa 9208604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 21820230 - 21820194
Alignment:
Q  37 ttatctaacttattcataatcctagttaacactccaa 73  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21820230 ttatctaacttattcctaatcctaattaacactccaa 21820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University