View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_30 (Length: 238)
Name: NF11743_low_30
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 36749537 - 36749318
Alignment:
| Q |
17 |
gcatatttgtccttatgacaatggtagtagttttgttgttataaaggaaaacaaatatgtatttgaccacaacaccacactaacttaaaccagagccttt |
116 |
Q |
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| T |
36749537 |
gcatatttgtccttatgacaatggtagtagttttgttgttataaaggaaaacaaatatgtatttgaccacaataccacactaacttaaaccagagccttt |
36749438 |
T |
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| Q |
117 |
atggtactgctctttacgtgtaaatatacacatcacaagataaaaatatagaacac-acaaatcacttgtctctctttcaacatatcctcctactctgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36749437 |
atggtactgctctttacgtgtaaatatacacatcacaagataaaaatatagaacacaacaaatcacttgtctctctttcaacatatccttctactctgat |
36749338 |
T |
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| Q |
216 |
aggacgacaatagtacaaaacag |
238 |
Q |
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| T |
36749337 |
ag---gacaatagtacaaaacag |
36749318 |
T |
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