View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_34 (Length: 206)
Name: NF11743_low_34
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 34583344 - 34583488
Alignment:
| Q |
18 |
atttctagctggcatttggtggaattggaaagctagaaacattgtttgtgagggaaatgactcaattgagctgttttccgtggcgtccgatgctagaaga |
117 |
Q |
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| T |
34583344 |
atttctagctggcatttggtggaattggaaagctagaaacattgtttgtgagggaaatgactcaattgagctgttttccgtggcgtccgatgctagaaga |
34583443 |
T |
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| Q |
118 |
ctttcttatcgcttattagtttgcttccccataaataccttgcac |
162 |
Q |
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| T |
34583444 |
ctttcgaatcacttattagtttgcttccccataaataccttgcac |
34583488 |
T |
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 13753528 - 13753413
Alignment:
| Q |
32 |
tttggtggaattggaaagctagaaacattgtttgtgagggaaatgactcaattgagctgttttccgtggcgtccgatgctagaagactttcttatcgctt |
131 |
Q |
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| T |
13753528 |
tttggtggaattggaaagctagaaacattgtttgtgtgggaaatgactctattgagctgttttccgtggtgtctgaggctagaagactttcgtctctctt |
13753429 |
T |
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| Q |
132 |
attagtttgcttcccc |
147 |
Q |
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| T |
13753428 |
atcagtttgcttcccc |
13753413 |
T |
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