View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_6 (Length: 523)
Name: NF11743_low_6
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Original strand, 39417539 - 39418033
Alignment:
| Q |
14 |
cacagataacaagcaaaactaaattaaacacttttgcattgaacttttaacttctcgataattttaacatcacttgataatttccccaatcatacatagt |
113 |
Q |
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| T |
39417539 |
cacaaataacaagcaaaactaaattaaacacttttgcattgaacttttaacttctcgataattttaacatcacttgataatttccccaatcatacatagt |
39417638 |
T |
|
| Q |
114 |
ttaacatttaacataaatatagaagcattgccacaatgaaaactactcaatgtgacaagtttttaaaagcttctaagaaatgtagtaaccaattaaaagt |
213 |
Q |
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| T |
39417639 |
ttaacatttaacataaatatagaagcattgccacaatgaaaactactcaatgtgacaagtttttaaaagcttctaagaaatgtagtaaccaattaaaagt |
39417738 |
T |
|
| Q |
214 |
actagtactaaacaaattagagaaaatataaaaactaaaacatcataatcagattcacccaaacaagttggagatgctggtttctaaagttgaccaaatg |
313 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39417739 |
actagtactaaccaaattagagaaaatataaaaactaaaacatcataatcagattcatccaaacaagttggagatgctggtttctaaagttgaccaaatg |
39417838 |
T |
|
| Q |
314 |
agtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcat-atctgaccgtttatctggaaacctatcatg |
412 |
Q |
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| T |
39417839 |
agtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcataatctgaccgtttatctggaaacctatcatg |
39417938 |
T |
|
| Q |
413 |
ctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactggatctttc |
507 |
Q |
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| T |
39417939 |
ctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactggatctttc |
39418033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 301 - 505
Target Start/End: Complemental strand, 44513658 - 44513453
Alignment:
| Q |
301 |
agttgaccaaatgagtgtgcaagataagcaagtgtccctacaagtggtgcattaacataagttgctggctctgattgctcata-tctgaccgtttatctg |
399 |
Q |
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||||| |||||||| |||||||||||||| | || |||||||| |||||||| | ||||| |||||||||||||||||||| ||||| |||| ||||| |
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| T |
44513658 |
agttgtccaaatgaatgtgcaagataagccaatgctcctacaagaggtgcattgatgtaagtagctggctctgattgctcataatctgaacgttcatctg |
44513559 |
T |
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| Q |
400 |
gaaacctatcatgctgatctggtcctccgacaacagcacccactagaatgttgggattaggagattgtgaactcatcacactgaaacctgctgaacactg |
499 |
Q |
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| T |
44513558 |
gaaagctatcatgcaaatcaggtcccccaacaactgtacccactagaatgttggggttaggggattgtgagtccattacactgaatccttctgaacattg |
44513459 |
T |
|
| Q |
500 |
gatctt |
505 |
Q |
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|||||| |
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|
| T |
44513458 |
gatctt |
44513453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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