View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11743_low_8 (Length: 484)
Name: NF11743_low_8
Description: NF11743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11743_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 18788248 - 18787787
Alignment:
| Q |
13 |
caaaatgatcatttcaaccaccaaaagcaatgattttcagtaaaaacaatgaaaccaactgttttcacttttaccctatcacttaacaaaacaaaaaggt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18788248 |
caaaatgatcatttcaaccaccaaaagcaatgattttcagtaaaaacaatgaaaccagctgttttcacttttaccctatcacttaacaaaacaaaaaggt |
18788149 |
T |
|
| Q |
113 |
attagtcttctgagatatcnnnnnnnctaccaagttaccaacgacttctatcctttgaatcactccatgcatacacattgttcggattctgactagtcct |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18788148 |
attagtcttctgagatatctttctttctaccaagttaccaacgacttctatcctttgaatcactccatgcatacacattgttcggattctgactagtcct |
18788049 |
T |
|
| Q |
213 |
acctcgtcctctcccaaaaggcacatgcgaacgttggtgttgatgataagatcctccatgatcattaggttgtttatgaaaaggagaaaacgatgtcatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
18788048 |
tcctcgtcctctcccaaaaggcacatgcgaacgttggtgttgatgataagatcctccatgatcattaggttgtttatgaaaaggagaaaacgacgacatc |
18787949 |
T |
|
| Q |
313 |
ttttcgttgatcgtctcgtgatcagtcctttctgatttccctctacctgaaccccatccaacaccagctcctttgtgaattgattcgggaggtgcaattc |
412 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18787948 |
ctttcgttgatcgtctcgtgatcaatcctttctgatttccctctacctgaaccccatccaacaccagctcctttgtgaattgattcgggaggtgcatttc |
18787849 |
T |
|
| Q |
413 |
gtgaaaagcttcttccaccaaaactagtcgagttagggcgaaattttgaaacacttccttct |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
18787848 |
gtgaaaagcttcttccaccaaaactagtcgagttagggtgaaattttgaaacatttccttct |
18787787 |
T |
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