View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_high_10 (Length: 326)
Name: NF11744_high_10
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 21791921 - 21791738
Alignment:
| Q |
7 |
tgcatctcagccttagttatttagttgtgaatgtaatatgtgctattaagcactttttaatatcttttgaaatttaagcacaaattttgaagtaatttag |
106 |
Q |
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| T |
21791921 |
tgcatctcagccttagttatttacttctgaatgtaatatgtgctattaagcactttttaatatcttttgaaatttaagcacaaattttgaagtaatttag |
21791822 |
T |
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| Q |
107 |
tatacaacatctgatgtaatatgtgcttgttgactgttaagcacaagttcaatttcttttttggtttgaaatgtgtatgcactt |
190 |
Q |
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| T |
21791821 |
tatacaacatctgatgtaatatgtgcttgttgactgttaagcacaagttcaatttcttttttggtttgaaatgtgtatgcactt |
21791738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 326
Target Start/End: Complemental strand, 21791698 - 21791609
Alignment:
| Q |
237 |
gcatttgatgtattatgtgctatactgcacttttgaattaatgaaatgatgtgctattattcacttttataatccaggttctgaacatat |
326 |
Q |
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| T |
21791698 |
gcatttgatgtattatgtgctataatgcacttttgaattaatgaaatgatgtgctattatgcacttttataatccaggttctgaacatat |
21791609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 11387413 - 11387596
Alignment:
| Q |
7 |
tgcatctcagccttagttatttagttgtgaatgtaatatgtgctattaagcactttttaatatcttttgaaatttaagcacaaattttgaagtaatttag |
106 |
Q |
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||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11387413 |
tgcatctcagccttagttatttacttctgaaagtaatatgtgctattaagcactttttaatatcttttgaaatttaagcacaaattttgaagtaatttag |
11387512 |
T |
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| Q |
107 |
tatacaacatctgatgtaatatgtgcttgttgactgttaagcacaagttcaatttcttttttggtttgaaatgtgtatgcactt |
190 |
Q |
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| T |
11387513 |
tatacaacatctgatgtaatatgtgcttgttgactgttaagcacaagttcaatttcttttttggtttgaaatgtgtatgcactt |
11387596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 11387636 - 11387725
Alignment:
| Q |
237 |
gcatttgatgtattatgtgctatactgcacttttgaattaatgaaatgatgtgctattattcacttttataatccaggttctgaacatat |
326 |
Q |
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| T |
11387636 |
gcatttgatgtattatgtgctataatgcacttttgaattaatgaaatgatgtgctattatgcacttttataatccaggttctgaacatat |
11387725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 43018517 - 43018546
Alignment:
| Q |
34 |
tgaatgtaatatgtgctattaagcactttt |
63 |
Q |
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| T |
43018517 |
tgaatgtaatatgtgctattaagcactttt |
43018546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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