View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_high_11 (Length: 318)

Name: NF11744_high_11
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_high_11
NF11744_high_11
[»] chr3 (8 HSPs)
chr3 (35-318)||(34477317-34477600)
chr3 (39-197)||(34462468-34462627)
chr3 (53-317)||(34467384-34467645)
chr3 (37-317)||(27625539-27625816)
chr3 (37-317)||(34511312-34511589)
chr3 (119-179)||(34486590-34486650)
chr3 (252-318)||(34372936-34373002)
chr3 (1-37)||(34477732-34477768)
[»] chr2 (4 HSPs)
chr2 (108-317)||(10526169-10526382)
chr2 (108-318)||(10532992-10533205)
chr2 (122-240)||(10524768-10524886)
chr2 (122-240)||(10531075-10531193)
[»] scaffold1215 (1 HSPs)
scaffold1215 (108-317)||(161-376)


Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 35 - 318
Target Start/End: Original strand, 34477317 - 34477600
Alignment:
Q  35 gagactcctttaatcaaattaagataaaatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatct 134  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34477317 gagactcctttaatcaaattaagatataatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatct 34477416  T
Q  135 tccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaaggtctcatcataaa 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34477417 tccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaacgtctcatcataaa 34477516  T
Q  235 tagaatgaagacactattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgtac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34477517 tagaatgaagacactattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgtac 34477600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 34462468 - 34462627
Alignment:
Q  39 ctcctttaatcaaatt-aagataaaatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatcttcc 137  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  34462468 ctcctttaatcaaatttaagatataatttcggaagaactaattagagagaacatcagaatgatattatattatcatctactcacacctcctgtatcttcg 34462567  T
Q  138 aaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatata 197  Q
    |||  | ||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  34462568 aaaaaaaccttacaacagaaagaatattagagaaataaaaatgcgaagagcgggaatata 34462627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 53 - 317
Target Start/End: Original strand, 34467384 - 34467645
Alignment:
Q  53 ttaagataaaatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatcttccaaagtagccttaaaa 152  Q
    |||||||| ||||| |||||||| | |||| ||||| |  ||||||||||||||| ||||||||| || |||||||||||||| ||||||| ||||||||    
T  34467384 ttaagatataattttggaagaacaagttagggagaataaaagaatgatatcatataatcatctacacaaacctcctgtatctttcaaagtaaccttaaaa 34467483  T
Q  153 cggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaaggtctcatcataaatagaatgaagacactatt 252  Q
     ||||| |||||||||||||||||||   |||||||||||| ||||  ||| ||||| ||||||||||  | |||| |||||||||||  ||||||||||    
T  34467484 tggaaagaatattagagaaataaaaaaccgaagagcgggaacataaacgtcgtgtttcttatatgtaa--tgtcataataaatagaatttagacactatt 34467581  T
Q  253 gataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgta 317  Q
    |||||| |  |||||||||||  ||||| ||||||  ||||||||||| ||| ||||||||||||    
T  34467582 gataatctcccactgaataaa-actcagtgatatcatgtagatccacaaatagttgagaaatgta 34467645  T

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Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 317
Target Start/End: Original strand, 27625539 - 27625816
Alignment:
Q  37 gactcctttaatcaaatt-aagataaaatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatctt 135  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||||| ||| | |  ||||||| ||||||||||||||||| || ||||  ||||||||    
T  27625539 gactcccttaatcaaatttaagatataattttggaagaacaaattagggaggataagagaatgaaatcatattatcatctacgcaaacct--tgtatctt 27625636  T
Q  136 ccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaaggtctcatcataaat 235  Q
     ||||| | ||||||||| |||| |||||||||||||||||||   |||||||||||| ||||  ||||||||| ||||||||  | | ||||||| |||    
T  27625637 tcaaagcaaccttaaaacagaaagaatattagagaaataaaaaaccgaagagcgggaacataaatgtcttgtttcttatatgt--gatgtcatcatgaat 27625734  T
Q  236 agaatgaagacactattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgta 317  Q
     ||||  |||||||| ||||||| | |||||||||||| ||||   ||||||  ||||||||||| ||||||||||||||||    
T  27625735 ggaatttagacactagtgataatctctcactgaataaaatctccatgatatcatgtagatccacaaataattgagaaatgta 27625816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 317
Target Start/End: Original strand, 34511312 - 34511589
Alignment:
Q  37 gactcctttaatcaaatt-aagataaaatttcggaagaactaattagagagaacatcagaatgatatcatattatcatctactcacacctcctgtatctt 135  Q
    |||||| ||||||||||| |||||| ||||| |||||||| |||||| ||| | |  ||||||| ||||||||||||||||| || ||||  ||||||||    
T  34511312 gactcccttaatcaaatttaagatataattttggaagaacaaattagggaggataagagaatgaaatcatattatcatctacgcaaacct--tgtatctt 34511409  T
Q  136 ccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaaggtctcatcataaat 235  Q
     ||||| | ||||||||| |||| |||||||||||||||||||   |||||||||||| ||||  ||||||||| ||||||||  | | ||||||| |||    
T  34511410 tcaaagcaaccttaaaacagaaagaatattagagaaataaaaaaccgaagagcgggaacataaatgtcttgtttcttatatgt--gatgtcatcatgaat 34511507  T
Q  236 agaatgaagacactattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgta 317  Q
     ||||  |||||||| ||||||| | |||||||||||| ||||   ||||||  ||||||||||| ||||||||||||||||    
T  34511508 ggaatttagacactagtgataatctctcactgaataaaatctccatgatatcatgtagatccacaaataattgagaaatgta 34511589  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 34486590 - 34486650
Alignment:
Q  119 cacacctcctgtatcttccaaagtagccttaaaacggaaataatattagagaaataaaaat 179  Q
    ||||||||||||||||| ||| ||| |||||||||||||| ||||||||| |||| |||||    
T  34486590 cacacctcctgtatctttcaatgtaaccttaaaacggaaagaatattagaaaaatgaaaat 34486650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 34373002 - 34372936
Alignment:
Q  252 tgataatatgtcactgaataaactctcagcgatatctcgtagatccacagataattgagaaatgtac 318  Q
    ||||||| || ||| |||||||||||||| ||||||  |||||||| ||||||| ||||||||||||    
T  34373002 tgataatctgccacagaataaactctcagtgatatcctgtagatccgcagataactgagaaatgtac 34372936  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34477768 - 34477732
Alignment:
Q  1 tcttggatatgttataaatatcagctatacttacgag 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34477768 tcttggatatgttataaatatcaactatacttacgag 34477732  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 317
Target Start/End: Original strand, 10526169 - 10526382
Alignment:
Q  108 tatcatctactcacacctcctgtatcttccaaagtagccttaaaacggaaataa----tattagagaaataaaaatgtgaagagcgggaatataatggtc 203  Q
    |||||| ||| ||||||||| |||||||  |||| | |||||||||||||| ||    |||| |||||||||||||  ||| | |||||||||||| |||    
T  10526169 tatcatatacacacacctcccgtatcttttaaagcaaccttaaaacggaaaaaactactatttgagaaataaaaatccgaaaaacgggaatataattgtc 10526268  T
Q  204 ttgtttattatatgtaaggtctcatcataaatagaatgaagacactattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagat 303  Q
    |||||| |||||||||| |||||||||| || |||||  ||| |||||||||||| || |||||||||||||||||| ||||||| |||||||  |||||    
T  10526269 ttgtttcttatatgtaatgtctcatcatgaacagaatttagatactattgataatctgccactgaataaactctcagtgatatcttgtagatctgcagat 10526368  T
Q  304 aattgagaaatgta 317  Q
    || |||||||||||    
T  10526369 aactgagaaatgta 10526382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 318
Target Start/End: Original strand, 10532992 - 10533205
Alignment:
Q  108 tatcatctactcacacctcctgtatcttccaaagtagccttaaaacggaaataa-tattagagaaataaaaatgtgaagagcgggaatataatggtcttg 206  Q
    |||||| ||| ||||||||| |||||||  |||| | |||||||||||||| || ||||||||||||||||||  ||| |||||||||||||| ||||||    
T  10532992 tatcatatacacacacctcccgtatcttttaaagcaaccttaaaacggaaaaaaatattagagaaataaaaatccgaaaagcgggaatataattgtcttg 10533091  T
Q  207 tttattatatgtaaggtctcatcataaatagaatgaagacac--tattgataatatgtcactgaataaactctcagcgatatctcgtagatccacagata 304  Q
    ||| |||||||||| |||||||||| || |||||  ||| ||  ||| |||||| || |||||| ||||||||||| ||||||| |||||||| ||||||    
T  10533092 tttcttatatgtaatgtctcatcatgaacagaatttagatactatatggataatctgccactgattaaactctcagtgatatcttgtagatccgcagata 10533191  T
Q  305 attgagaaatgtac 318  Q
    |  |||||||||||    
T  10533192 accgagaaatgtac 10533205  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 10524768 - 10524886
Alignment:
Q  122 acctcctgtatcttccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaag 221  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||   |||||  |||||||||  |||||||||  |||||||||     
T  10524768 acctcctgtatcttccaaggtaaccttaaaacggaaagaatattagagaaataaaaatccaaagagtaggaatataaccgtcttgtttcatatatgtaat 10524867  T
Q  222 gtctcatcataaatagaat 240  Q
    |||||||||| ||||||||    
T  10524868 gtctcatcatgaatagaat 10524886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 10531075 - 10531193
Alignment:
Q  122 acctcctgtatcttccaaagtagccttaaaacggaaataatattagagaaataaaaatgtgaagagcgggaatataatggtcttgtttattatatgtaag 221  Q
    |||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||   |||||  ||||||||   ||||||||| ||||||||||     
T  10531075 acctcccgtatcttccaaagtaaccttaaaatggaaagaatattagagaaataaaaatccaaagagtaggaatatacccgtcttgtttcttatatgtaat 10531174  T
Q  222 gtctcatcataaatagaat 240  Q
    |||||||||| ||||||||    
T  10531175 gtctcatcatgaatagaat 10531193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 317
Target Start/End: Original strand, 161 - 376
Alignment:
Q  108 tatcatctactcacacctcctgtatcttccaaagtagccttaaaacggaaataa----tattagagaaataaaaatgtgaagagcgggaatataatggtc 203  Q
    |||||| ||| ||||||||| |||||||  |||| | |||||||||||||| ||    |||| |||||||||||||  ||| | |||||||||||| |||    
T  161 tatcatatacacacacctcccgtatcttttaaagcaaccttaaaacggaaaaaactactatttgagaaataaaaatccgaaaaacgggaatataattgtc 260  T
Q  204 ttgtttattatatgtaaggtctcatcataaatagaatgaagacac--tattgataatatgtcactgaataaactctcagcgatatctcgtagatccacag 301  Q
    |||||| |||||||||| |||||||||| || |||||  ||| ||  ||| |||||| || |||||| ||||||||||| ||||||| |||||||  |||    
T  261 ttgtttcttatatgtaatgtctcatcatgaacagaatttagatactatatggataatctgccactgattaaactctcagtgatatcttgtagatctgcag 360  T
Q  302 ataattgagaaatgta 317  Q
    |||| |||||||||||    
T  361 ataactgagaaatgta 376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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