View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_high_15 (Length: 287)
Name: NF11744_high_15
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 24482335 - 24482249
Alignment:
| Q |
17 |
agttccctccatataattactataaaccgccacccccatcaccgccacctccttacgattacaaattaccaccatattactacaaat |
103 |
Q |
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| T |
24482335 |
agttccctccatataattactataaacctccacccccgtcaccgccacctccttatgattacaaattaccaccatattactacaaat |
24482249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24482486 - 24482437
Alignment:
| Q |
19 |
ttccctccatataattactataaaccgccacccccatcaccgccacctcc |
68 |
Q |
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| T |
24482486 |
ttccctccatataattactataaatctccaccaccatcaccaccacctcc |
24482437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 24481775 - 24481742
Alignment:
| Q |
241 |
tacgtatacaaatcaccacctcctccaccctatg |
274 |
Q |
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| T |
24481775 |
tacgtatacaaatcaccacctcctccaccttatg |
24481742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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