View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_high_17 (Length: 247)
Name: NF11744_high_17
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33117490 - 33117715
Alignment:
| Q |
1 |
gaaaaggaatcaatcaagattgaaatacaactattagaatacgtggtttagtttaatacaaatctataaaaccaacttgtaaagtgagattgcacctatt |
100 |
Q |
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| T |
33117490 |
gaaaaggaatcaatcaagattgaaatagaactattagaataagtggtttggtttaatacaactccataaaactaatttgtaaagtgagattgcacctatt |
33117589 |
T |
|
| Q |
101 |
tataaacacatatttaagttatatctaattcaatgcgagactttttaacactctttcacgtccatcattattgagtttagcgtgtagatataaatagttg |
200 |
Q |
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|||||||||||||||||||||||||||||| |||| || | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33117590 |
tataaacacatatttaagttatatctaatttaatgtgaaattttttaatactctttcacgtccatcattattgagtttagtgtgtagatataaatagttg |
33117689 |
T |
|
| Q |
201 |
gtagtccgataacaaaattctaatag |
226 |
Q |
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||||||||||||| |||| ||||||| |
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| T |
33117690 |
gtagtccgataacgaaatcctaatag |
33117715 |
T |
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