View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_high_2 (Length: 445)
Name: NF11744_high_2
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 47473851 - 47473461
Alignment:
| Q |
18 |
tggagaacattggtgagcacaaaggatatctggtagggtttatgttgatatttatgaggcacgtacagtggcattgctagatcttggttgccgtagaagc |
117 |
Q |
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| T |
47473851 |
tggagtacattggggagcacaaaggatatctggtagggtttatgttgatatttatgaggcacgtacagtggcattgctagatcttggttgccgtagaagc |
47473752 |
T |
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| Q |
118 |
tctattagtgtctccacctgtccccatgaagaggaacaatcaataatcgaacaaaaaaattgatataaatgaaaatattctcccatgtc--aacnnnnnn |
215 |
Q |
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| T |
47473751 |
tctattagtgtctccacctgtccccatgaagaggaacaatcaataatcgaacaaaaaaattgatataaatgaaaatattctcccatgtcaaaaaataaaa |
47473652 |
T |
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| Q |
216 |
nnnnntgtattatcactattatgattcatccat----nnnnnnnntacttatcttacgagatgaatttttaactattaaacttcttgaaataaaatacat |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
47473651 |
taaaatgtattatcactattatgattcatccataaaaaaaatacttacttatctcactagatgaatatttaactattagacttcttgaaaaaaaatacat |
47473552 |
T |
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| Q |
312 |
gannnnnnnnnnnaaagtcatgttttgttgagcgaaacatttattgagacatatttcttcatttaactatatttttaaataatttgcaaaa |
402 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47473551 |
gatttttttttttgaagtcatgttttgttgagcgaaacatttattaagacatatttcttcatttaactatttttttaaataatttgcaaaa |
47473461 |
T |
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