View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11744_high_23 (Length: 239)
Name: NF11744_high_23
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 49016369 - 49016157
Alignment:
| Q |
1 |
aagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016369 |
aagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatg |
49016270 |
T |
|
| Q |
101 |
gatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49016269 |
gatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccatt |
49016172 |
T |
|
| Q |
201 |
gtatagatctaagcc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49016171 |
gtatagatctaagcc |
49016157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 490388 - 490602
Alignment:
| Q |
4 |
tttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggat |
103 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
490388 |
tttctattttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggat |
490487 |
T |
|
| Q |
104 |
ctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgta |
203 |
Q |
| |
|
||||||| ||||||||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
490488 |
ctttactgcggtaatatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgta |
490587 |
T |
|
| Q |
204 |
tagatctaagccaca |
218 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
490588 |
caagtctaagccaca |
490602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 9072069 - 9071869
Alignment:
| Q |
4 |
tttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggat |
103 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||| |
|
|
| T |
9072069 |
tttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggat |
9071970 |
T |
|
| Q |
104 |
ctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgta |
203 |
Q |
| |
|
|||| ||||| ||||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
9071969 |
ctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgta |
9071870 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
|
| |
|
|
| T |
9071869 |
t |
9071869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
7 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
106 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
|
|
| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
|
| Q |
107 |
tactacggtaatatgtga |
124 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University