View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_high_25 (Length: 229)

Name: NF11744_high_25
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_high_25
NF11744_high_25
[»] chr7 (30 HSPs)
chr7 (1-229)||(8545544-8545772)
chr7 (1-227)||(8570222-8570448)
chr7 (1-226)||(8576237-8576462)
chr7 (1-227)||(8581611-8581837)
chr7 (3-229)||(29581870-29582096)
chr7 (1-229)||(29577701-29577929)
chr7 (3-220)||(8382914-8383131)
chr7 (61-217)||(8654421-8654577)
chr7 (57-229)||(8659330-8659502)
chr7 (3-224)||(8537949-8538170)
chr7 (3-223)||(8609830-8610050)
chr7 (17-214)||(7877777-7877974)
chr7 (61-229)||(10494403-10494571)
chr7 (61-229)||(13333485-13333653)
chr7 (57-225)||(27830908-27831076)
chr7 (54-229)||(8585735-8585910)
chr7 (61-229)||(8667390-8667558)
chr7 (54-226)||(17260205-17260377)
chr7 (14-217)||(8590562-8590765)
chr7 (52-229)||(8601936-8602113)
chr7 (73-229)||(8017442-8017598)
chr7 (129-229)||(8559372-8559472)
chr7 (57-229)||(1301427-1301599)
chr7 (54-116)||(17267903-17267965)
chr7 (57-217)||(8646844-8647004)
chr7 (62-225)||(6789484-6789647)
chr7 (164-229)||(8636372-8636437)
chr7 (167-229)||(8628609-8628671)
chr7 (87-217)||(39985643-39985773)
chr7 (165-226)||(17268014-17268075)
[»] chr8 (1 HSPs)
chr8 (16-226)||(12528430-12528640)
[»] chr2 (15 HSPs)
chr2 (54-225)||(7542190-7542361)
chr2 (57-229)||(16662021-16662193)
chr2 (57-217)||(16657558-16657718)
chr2 (54-225)||(12245439-12245610)
chr2 (54-220)||(14703372-14703538)
chr2 (54-225)||(12258614-12258785)
chr2 (69-208)||(17648091-17648230)
chr2 (63-217)||(12234662-12234816)
chr2 (63-148)||(11999380-11999465)
chr2 (57-217)||(43625379-43625539)
chr2 (69-208)||(17621995-17622134)
chr2 (106-190)||(17718019-17718103)
chr2 (107-208)||(17705788-17705889)
chr2 (73-190)||(17716755-17716872)
chr2 (106-190)||(17666751-17666835)
[»] chr1 (3 HSPs)
chr1 (57-229)||(4678587-4678759)
chr1 (57-229)||(34466822-34466994)
chr1 (62-225)||(15595006-15595169)
[»] chr4 (5 HSPs)
chr4 (57-229)||(30775219-30775391)
chr4 (96-225)||(35132454-35132583)
chr4 (73-214)||(54396406-54396547)
chr4 (61-113)||(9336036-9336088)
chr4 (114-190)||(23587801-23587877)
[»] chr5 (1 HSPs)
chr5 (57-225)||(28219885-28220053)
[»] chr6 (1 HSPs)
chr6 (162-217)||(11133066-11133121)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8545544 - 8545772
Alignment:
Q  1 agtcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8545544 agtcaataccttgatataaagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggcagttctcaacctcctcaa 8545643  T
Q  101 ggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtga 200  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |    
T  8545644 ggcttctgggttccgactaatatcctcattgttcttcctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaa 8545743  T
Q  201 gtgtctccagcagtggccttgacttcaaa 229  Q
    ||||||||||||||||||||||| |||||    
T  8545744 gtgtctccagcagtggccttgacatcaaa 8545772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8570222 - 8570448
Alignment:
Q  1 agtcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaa 100  Q
    ||||||| || | ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||| || ||||| |||||||||||    
T  8570222 agtcaattcccttatatatagcatctagctcaattgtggcctcagtatcatatgaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaa 8570321  T
Q  101 ggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtga 200  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| |||||||| || ||||||    
T  8570322 ggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttcacaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtga 8570421  T
Q  201 gtgtctccagcagtggccttgacttca 227  Q
    |||||||||||||||||||||||||||    
T  8570422 gtgtctccagcagtggccttgacttca 8570448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8576237 - 8576462
Alignment:
Q  1 agtcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaa 100  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||    
T  8576237 agtcaatacctttatatatagcatctagttcaattgtggcatcagtgtcatatgaaagtgtcctttttgccttttcacaagcagttctcaacctccttaa 8576336  T
Q  101 ggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtga 200  Q
    ||||||||  ||| ||||||||||||| |||| |||  || |||||||||| | |||||||| ||||||| |||||||||||||||  || |||||||||    
T  8576337 ggcttttgaattctcactaatatcctctttgtacttgttcctgaactccttaacaaagtgatccaccattatgttatcaaagtcttggcctcctaggtga 8576436  T
Q  201 gtgtctccagcagtggccttgacttc 226  Q
    |||||||| |||||||||||||||||    
T  8576437 gtgtctccggcagtggccttgacttc 8576462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8581611 - 8581837
Alignment:
Q  1 agtcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaa 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||| || || |||||||| || |     
T  8581611 agtcaataccttgatgtatagaatctaggtcaattgtggcctcagtgtcatatgaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaat 8581710  T
Q  101 ggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtga 200  Q
    ||||||||| || ||| |||| ||||| || |  || ||||||||||||  || ||||||||||||||||||||||||||| ||||| || || ||||||    
T  8581711 ggcttttggatttccaataatctcctctttatgttttctcttgaactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtga 8581810  T
Q  201 gtgtctccagcagtggccttgacttca 227  Q
    |||||||||||||||||||||||||||    
T  8581811 gtgtctccagcagtggccttgacttca 8581837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 29582096 - 29581870
Alignment:
Q  3 tcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaagg 102  Q
    |||||||||||| | || ||||||| ||||||||||| |||| ||||  ||||||||||||| |||||| ||||||| || ||||||| | |||| || |    
T  29582096 tcaataccttgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcctctttgccctctcacaagctgttctcagcttccttaaag 29581997  T
Q  103 cttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagt 202  Q
    ||||||||||||||||||| |||  ||||||||||||||| ||||| |||  ||||| ||||||||||| |||||||||||| || || |||||||||||    
T  29581996 cttttgggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagtcctctcctcctaggtgagt 29581897  T
Q  203 gtctccagcagtggccttgacttcaaa 229  Q
     || |||||||||||||| ||||||||    
T  29581896 atcgccagcagtggccttcacttcaaa 29581870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 29577929 - 29577701
Alignment:
Q  1 agtcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaa 100  Q
    |||||||||| ||| |||||||||||| |||||||||||||||| |||| |||||||||| ||| |||||| ||||||| || ||||||| | |||| ||    
T  29577929 agtcaataccctgacatatagcatctatgtcaattgtggcctcaatgtcatatgaaagtgccctctttgccctctcacaagcagttctcagcttccttaa 29577830  T
Q  101 ggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtga 200  Q
     ||||||||||||  |||||| ||| |||||||||||||||| ||||| |||| ||||||  |||||||| | ||||| ||||| || || |||||||||    
T  29577829 agcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcctctcctcctaggtga 29577730  T
Q  201 gtgtctccagcagtggccttgacttcaaa 229  Q
    || || |||||||||||||| ||||||||    
T  29577729 gtatcaccagcagtggcctttacttcaaa 29577701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 8383131 - 8382914
Alignment:
Q  3 tcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaagg 102  Q
    |||||||| | ||| | |||||||| |||||| | ||||||| | ||  |||||||||||||||||||| |||| || |||||||| ||||| || |  |    
T  8383131 tcaataccctcatacagagcatctatgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagag 8383032  T
Q  103 cttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagt 202  Q
    | ||||||||||||||||| |||| ||| | ||||||||||||||| |  | |||||  ||||| ||||||||||| ||||||||||| ||||| |||||    
T  8383031 cctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaacaaagtacttcacgattctgttatctaagtcttcacctcctagatgagt 8382932  T
Q  203 gtctccagcagtggcctt 220  Q
    |||||| |||||||||||    
T  8382931 gtctccggcagtggcctt 8382914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 8654421 - 8654577
Alignment:
Q  61 tcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtg 160  Q
    ||||||||||| |||||||||| |||||||||||||| |||| ||||||||| || ||||| ||| | || |||||| | ||||||||||  | |||||     
T  8654421 tcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactttattcttctttttgaactcctctacaaagta 8654520  T
Q  161 attcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
     | |||||||||||||||||||||||| || |||||||| |||| ||||||||||||    
T  8654521 gtacaccattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggc 8654577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 8659330 - 8659502
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||| |||||| |||||||||| |||||||||||||| |||| ||||||||| |||||||| ||| | || |||||| | ||||||||||  | ||    
T  8659330 agtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttattcttctttttgaactcctctacaa 8659429  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||  |||||||||||| |||||||||| || || || |||||||||| ||||| |||||| || ||||||||    
T  8659430 agtagttcaccattctgctatcaaagtcctctcctccaaggtgagtgtttccagaagtggcttttacttcaaa 8659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 8537949 - 8538170
Alignment:
Q  3 tcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaagg 102  Q
    |||| ||| ||| ||||||||||||  ||||||||||| ||||||||||| ||||| | |||||||||| |||| || || ||||||||| ||||||  |    
T  8537949 tcaacaccctgacatatagcatctatatcaattgtggcttcagtgtcgtaagaaagcgacctttttgccctctcgcatgcagttctcaacttcctcagag 8538048  T
Q  103 cttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagt 202  Q
    ||||||  || |||||||| ||  | ||||| |||||||| || || |||| ||| ||||||||||  |  ||||||||||| || || || ||||||||    
T  8538049 cttttgaatttccactaatgtcaactttgtttttcctcttcaattcattcacaaaatgattcaccaaccgattatcaaagtcctctcctccaaggtgagt 8538148  T
Q  203 gtctccagcagtggccttgact 224  Q
     ||||| |||||||||||||||    
T  8538149 atctccggcagtggccttgact 8538170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 8609830 - 8610050
Alignment:
Q  3 tcaataccttgatatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaagg 102  Q
    |||||||| | | |||||||||| |  |||||||||||||| |||||  ||||||||||||| |||||| ||||||| || || ||||||||||| |  |    
T  8609830 tcaataccctcagatatagcatcaatatcaattgtggcctccgtgtcaaatgaaagtgtcctctttgccctctcacaagcagtcctcaacctcctaagag 8609929  T
Q  103 cttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagt 202  Q
    |  | | ||||||||| ||||| |     | |||||| ||||||||||||| ||||||||| |||||||||| ||||||||| || || || ||||||||    
T  8609930 ccctcgagttcccactgatatcttttgaatgcttccttttgaactccttcacaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagt 8610029  T
Q  203 gtctccagcagtggccttgac 223  Q
     ||||||||||| ||||||||    
T  8610030 atctccagcagtagccttgac 8610050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 7877974 - 7877777
Alignment:
Q  17 tatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttccca 116  Q
    ||||||||||| ||||||||| | |||||| ||  |||| ||||||||||| ||| ||||||| || |||||||||||||| | |||  | ||||| |||    
T  7877974 tatagcatctatgtcaattgtagtctcagtatcaaatgacagtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttcca 7877875  T
Q  117 ctaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagt 214  Q
    | ||| ||| | || ||||||||||| |||||| |||  || || |||| |||||||||||||||||| || || ||||||||||| ||||| |||||    
T  7877874 ccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 10494571 - 10494403
Alignment:
Q  61 tcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtg 160  Q
    ||||||||||| |||||||||| |||||||||||||| |||| |||||| |||||||| || ||| | || |||||| | ||||||||||  | ||| |     
T  10494571 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 10494472  T
Q  161 attcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||||||||||||||||| ||||| || || || ||||||||||  || |||||||| || ||||||||    
T  10494471 attcaccattctgttatcgaagtcctctcccccaaggtgagtgttacctgcagtggcttttacttcaaa 10494403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 229
Target Start/End: Complemental strand, 13333653 - 13333485
Alignment:
Q  61 tcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtg 160  Q
    |||||||| || |||||||||| |||||||||||||| |||| ||||||||||||||| |||||  | || |||||| | ||||||||||  | ||| |     
T  13333653 tccttttttccctctcacaggcagttctcaacctccttaaggattttgggttcccactgatatcgacgttattcttctttttgaactcctcaacaaaata 13333554  T
Q  161 attcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
     ||||||||||||||||| |||||||| || || |||||||||| ||| || ||||| || ||||||||    
T  13333553 gttcaccattctgttatcgaagtcttctcccccaaggtgagtgtttcctgcggtggcttttacttcaaa 13333485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 27831076 - 27830908
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||||||||||||||||||    ||||||| ||||||||||||| |||||||||||||||| ||| |  | |||||| |||||||| ||| || ||    
T  27831076 agtgtcctttttgccttctcacattaggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaa 27830977  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
    | |  |||||||| || ||||||||||| || || || |||||||||| ||||||||| ||||| ||||    
T  27830976 aatagttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttccagcagttgccttaactt 27830908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 8585910 - 8585735
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    |||||||||||||||||||| ||||| |||||||| |||| |||||| ||| ||||||||  | |||||||| |||||||||| ||||| || ||||  |    
T  8585910 gaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaa 8585811  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
     |||||  |||| ||||||||||||||||||  | || || |||||||| | |||||| || || || ||||||||    
T  8585810 caaagtagttcaacattctgttatcaaagtcccctcccccaaggtgagtatttccagcggttgctttaacttcaaa 8585735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 229
Target Start/End: Original strand, 8667390 - 8667558
Alignment:
Q  61 tcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtg 160  Q
    ||||||||||| |||||||||| |||||||||||||| |||| ||||||||||  ||| || ||| | || |||||| | || |||||||  | ||| |     
T  8667390 tcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattcttcttttttaactcctcaacaaaata 8667489  T
Q  161 attcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
     ||||||||||||||||| ||||| || || || |||||||||| ||| |||||||| || ||||||||    
T  8667490 gttcaccattctgttatcgaagtcctcgcccccaaggtgagtgtttcctgcagtggctttcacttcaaa 8667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 17260205 - 17260377
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    ||||||||||||||||| || ||||| || |||||||||||||| |||||||||||||||||| |||| |||   || ||| | || |||| |||||  |    
T  17260205 gaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggcttttgggttcccaataatgtccaattttttcgttcttttgatctcctcta 17260304  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttc 226  Q
     ||| |  | ||||||||| ||||||||||| ||||| || || |||||||||||| | |||||||| |||||    
T  17260305 caaaatagtacaccattctattatcaaagtcctcacccccaagatgagtgtctccaccggtggccttaacttc 17260377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 8590562 - 8590765
Alignment:
Q  14 atatatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttc 113  Q
    |||||||||||||| | | ||||| |||||||| || ||||| ||||||||||| ||| ||||||| || ||| |||||||||| |  ||  ||| ||||    
T  8590562 atatatagcatctatgccgattgttgcctcagtatcatatgacagtgtccttttagccctctcacaagctgttttcaacctcctaagagcccttgcgttc 8590661  T
Q  114 ccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcag 213  Q
    ||||| | |||| | || ||||||||| | ||||||||||  || || |  |||||||||||||||||||| || || |||||||| || ||||| | ||    
T  8590662 ccacttaaatccactttattcttcctcctaaactccttcaccaaatggtgaaccattctgttatcaaagtcctctcctcctaggtgggtatctccggaag 8590761  T
Q  214 tggc 217  Q
    ||||    
T  8590762 tggc 8590765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 8601936 - 8602113
Alignment:
Q  52 atgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactcctt 151  Q
    |||||||||||||||||| | |||| ||||||||||| ||||| || |   |  | ||| |||||||||| ||||   | | |||||| ||||||||| |    
T  8601936 atgaaagtgtcctttttgtcctctcgcaggccgttcttaaccttctaagcaccctcgggctcccactaatgtccttcatatacttcctgttgaactccat 8602035  T
Q  152 cataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
     | |||||| |||||||||| |||||||||||| || || || ||||| |||||||| | ||||||||||||||||||    
T  8602036 aacaaagtggttcaccattcggttatcaaagtcctctcctccaaggtgtgtgtctccggaagtggccttgacttcaaa 8602113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 8017598 - 8017442
Alignment:
Q  73 tctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattct 172  Q
    ||||||| || || ||||||||||| |  ||| | ||||| |||||||||||||  |||||||||||||| |||||||  | ||| ||||| ||||||||    
T  8017598 tctcacaagctgtcctcaacctcctaagtgctctagggtttccactaatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattct 8017499  T
Q  173 gttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    ||| ||||| |||||||| || || || || || |||||||| ||||| ||||||||    
T  8017498 gttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagccttaacttcaaa 8017442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 8559372 - 8559472
Alignment:
Q  129 ttgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaa 228  Q
    |||||||||||||  ||||| || | |||||| ||||||||||||||||||||||| || || || ||||| |||||||| | |||||||||||||||||    
T  8559372 ttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcctccgaggtgtgtgtctccggaagtggccttgacttcaa 8559471  T
Q  229 a 229  Q
    |    
T  8559472 a 8559472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 1301427 - 1301599
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    ||||||||||||||| ||||||| ||  ||||||||||||| |||| |||  |||| |||||||| ||| | || |||||| |  |||||||||  | ||    
T  1301427 agtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttctttctgaactcctctacaa 1301526  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||   |||||||||| ||||||||||| || || || |||||||| | |||| ||||||| || ||||||||    
T  1301527 agtagctcaccattctattatcaaagtcctctcctccaaggtgagtatttccaccagtggcttttacttcaaa 1301599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 17267903 - 17267965
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttccca 116  Q
    ||||||||||||||||| || ||||| || |||||||||||||||| ||||||||||||||||    
T  17267903 gaaagtgtcctttttgctttttcacatgcagttctcaacctcctcatggcttttgggttccca 17267965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 8646844 - 8647004
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    ||||||||||||||  |||| || ||||||||||||||||| |||||| ||| ||| ||| |||| ||| | ||||||||| | || || || |    ||    
T  8646844 agtgtcctttttgctctctcgcatgccgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttgttaaattcttgtgcaa 8646943  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
    |||| | |||||||||  |||||||||| || || || |||||||||| |||||| |||||    
T  8646944 agtggtccaccattctactatcaaagtcctctcctccgaggtgagtgtttccagcggtggc 8647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 6789484 - 6789647
Alignment:
Q  62 cctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtga 161  Q
    |||||| ||| | ||||| || ||||||||||| || |||||  ||| ||| ||| |||||||| | |||||||||||||| |||||||    |||||      
T  6789484 ccttttggccctttcacacgcagttctcaaccttcttaaggcccttgagtttccagtaatatccactttgttcttcctcttaaactcctctgcaaagtag 6789583  T
Q  162 ttcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
    || |||| || |||||||||||| || || || |||||||||| |||| | |||||||| ||||    
T  6789584 tttaccaatcggttatcaaagtcctctcctccgaggtgagtgtttccaccggtggccttaactt 6789647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 8636437 - 8636372
Alignment:
Q  164 caccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    ||||||||||||||||||||| || || || ||||| |||||||| |||||||| || ||||||||    
T  8636437 caccattctgttatcaaagtcctctcctccaaggtgtgtgtctccggcagtggctttaacttcaaa 8636372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 8628609 - 8628671
Alignment:
Q  167 cattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||||||||||||||||| || || || |||||||| | |||||||||||| || ||||||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaa 8628671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 39985643 - 39985773
Alignment:
Q  87 ctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtctt 186  Q
    ||||||||||| |  ||| | ||||| ||||| || ||||  |||||||| ||||||||||| |  | |||||| |||||||||||||| ||||| || |    
T  39985643 ctcaacctcctaagagctctggggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttgtcaaaatcct 39985742  T
Q  187 caccgcctaggtgagtgtctccagcagtggc 217  Q
    |||| || || || |||||||| || |||||    
T  39985743 cacctccaagatgggtgtctccggctgtggc 39985773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 17268014 - 17268075
Alignment:
Q  165 accattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttc 226  Q
    |||||||| ||||||||||| ||||| || || |||||||||||| | |||||||| |||||    
T  17268014 accattctattatcaaagtcctcacccccaagatgagtgtctccaccggtggccttaacttc 17268075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 12528430 - 12528640
Alignment:
Q  16 atatagcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttccc 115  Q
    |||||||||||| ||||||||| ||||| || |||||||||||||||||||| |||||||| |||   |||||||| ||||| | |||||||| ||||||    
T  12528430 atatagcatctatgtcaattgtagcctctgtatcgtatgaaagtgtccttttcgccttctcgcagttagttctcaatctccttagggcttttgagttccc 12528529  T
Q  116 actaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtg 215  Q
    | |||| ||  | |||||||||||||| ||||| |||| |||||||||||||||||  ||||||||||| || || || |||||||||||||| ||||||    
T  12528530 aataatgtcaactttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtg 12528629  T
Q  216 gccttgacttc 226  Q
    |||||||||||    
T  12528630 gccttgacttc 12528640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 7542190 - 7542361
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    |||||||  ||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||||| ||| | |||||||| ||||||||||| |  |    
T  7542190 gaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgta 7542289  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
     |||||  ||| ||||||| |||||||||||||| || || ||||||||||  |||||||||||||| ||||    
T  7542290 caaagtagttcgccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggccttaactt 7542361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 16662193 - 16662021
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    ||||||||||| ||||| ||||| |  ||||||||||||||||||||| |||| |||| | | |||||| | ||||||||||| || || || |||| ||    
T  16662193 agtgtccttttcgccttttcacaagaagttctcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctttcacaa 16662094  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||  |||| |||||||||||||||||| || || || |||||||||| ||||| |||||| || ||||||||    
T  16662093 agtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggctttaacttcaaa 16662021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 16657718 - 16657558
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||| |||||| ||||||| || ||||||||||||||||||||| ||| ||||||||| || ||| | || |||||| | |  |||||||  | ||    
T  16657718 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaa 16657619  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
    |||  |||||| |||||||||||||||| || || || |||||||||| ||| ||||||||    
T  16657618 agtagttcaccgttctgttatcaaagtcctctcccccaaggtgagtgtttccggcagtggc 16657558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 12245610 - 12245439
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    |||||| | ||||||||| ||||||| || |||||||| ||||||||||||||||   |  |||||||||||   |||||||| |||||||||||||       
T  12245610 gaaagtattctttttgccctctcacaagcagttctcaatctcctcaaggcttttgaacttgcactaatatccaatttgttctttctcttgaactcctgtg 12245511  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
     |||||  || |||||||| |||||||| || || || || |||||||||| ||||||||||||||| ||||    
T  12245510 caaagtagtttaccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggccttaactt 12245439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 14703372 - 14703538
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    |||||||| ||||||||| |||| || || |||||||| ||||| ||||||||||| || |||||||| |||    |||| || ||||||||||| |  |    
T  14703372 gaaagtgttctttttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactcttgaa 14703471  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggcctt 220  Q
     |||||  ||||||||||||||||| ||||| || || || |||||||||| ||||||||| |||||    
T  14703472 caaagtagttcaccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagcctt 14703538  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 12258785 - 12258614
Alignment:
Q  54 gaaagtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttca 153  Q
    |||||||  ||||||||  ||||||| || ||| |||| |||||||| ||| |||| || ||||| |||||  | |||||||| ||||||||||| |  |    
T  12258785 gaaagtgatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctcttgaactcttcta 12258686  T
Q  154 taaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
     ||||| | |||||||||| ||||||||||| || || || ||||| |||| |||||| || ||||| ||||    
T  12258685 caaagtaactcaccattctattatcaaagtcctctcctccaaggtgcgtgtttccagctgtagccttaactt 12258614  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 17648230 - 17648091
Alignment:
Q  69 gccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcacca 168  Q
    ||||||||||| || || ||||||||| | |  ||| ||||||| |||||||| ||||  |||||||| ||||||||| | |  | ||||||||||||||    
T  17648230 gccttctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaacacttgaacaaagtgattcacca 17648131  T
Q  169 ttctgttatcaaagtcttcaccgcctaggtgagtgtctcc 208  Q
    ||||||||| ||| || ||||| || || || ||||||||    
T  17648130 ttctgttattaaaatcctcacctccaagatgggtgtctcc 17648091  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 12234662 - 12234816
Alignment:
Q  63 ctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgat 162  Q
    ||||||||| ||||||| || ||||| |||||||||||||||||||| || ||||| || ||| | || ||||| || |||||||| |    || ||  |    
T  12234662 ctttttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagt 12234761  T
Q  163 tcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
    | |||||||||||||||||||| || || || |||||||||| ||| || |||||    
T  12234762 ttaccattctgttatcaaagtcctctcccccgaggtgagtgtttccggctgtggc 12234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 11999380 - 11999465
Alignment:
Q  63 ctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactc 148  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||   | |||||||||||| | | ||||||  ||||||||||    
T  11999380 ctttttgccctctcacaagcagttctcaacctcctcaaggcttttgaacttccactaatatccacttcgttctttatcttgaactc 11999465  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 43625379 - 43625539
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||||||| |  |||| || |||||||||||||| || | |||| ||| ||| ||| |||||||| ||||||||||| |||  || || |    ||    
T  43625379 agtgtcctttttcctctctcgcatgccgttctcaaccttcttatggctcttgagtttccaataatatccacattgttcttcttctcaaattcttctgcaa 43625478  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
    |||  ||||||||||| | ||||||||| || || || |||||||||| ||||||||||||    
T  43625479 agtagttcaccattctatcatcaaagtcctctcctccaaggtgagtgtttccagcagtggc 43625539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 17622134 - 17621995
Alignment:
Q  69 gccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcacca 168  Q
    ||||||||||| || || ||||||||| | |  ||| ||||||| ||||| || ||||  |||||||| ||||||||||| |  | |||||| |||||||    
T  17622134 gccttctcacaagcagtcctcaacctcataagagctcttgggttgccactgatgtccttcttgttctttctcttgaactcttgaacaaagtggttcacca 17622035  T
Q  169 ttctgttatcaaagtcttcaccgcctaggtgagtgtctcc 208  Q
    ||||||||| ||| || ||||| || || || ||||||||    
T  17622034 ttctgttattaaaatcctcacctccaagatgggtgtctcc 17621995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 17718103 - 17718019
Alignment:
Q  106 ttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcacc 190  Q
    ||||||| |||||||| ||||  |||||||| ||||||||||| |  | |||||| |||||||||||||||| ||| || |||||    
T  17718103 ttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacc 17718019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 17705889 - 17705788
Alignment:
Q  107 tgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtct 206  Q
    |||||| |||||||| ||||  || ||||| ||||||||||| |  | |||||| |||||||||||||||| ||| || ||||| || || || ||||||    
T  17705889 tgggttgccactaatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggtgtct 17705790  T
Q  207 cc 208  Q
    ||    
T  17705789 cc 17705788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 17716872 - 17716755
Alignment:
Q  73 tctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattct 172  Q
    ||||||| || || ||||||||| | |  ||| ||||||| |||||||| ||||  |||||||| |||||||||||    | |||||| |||||||||||    
T  17716872 tctcacaagcagtcctcaacctcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactctcgaacaaagtggttcaccattct 17716773  T
Q  173 gttatcaaagtcttcacc 190  Q
    ||||| ||| || |||||    
T  17716772 gttattaaaatcctcacc 17716755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 17666835 - 17666751
Alignment:
Q  106 ttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcacc 190  Q
    ||||||| ||||| || ||||  |||||||| || |||||||| |  | ||||||||||||||||||||||| ||| || |||||    
T  17666835 ttgggttgccactgatgtccttgttgttctttcttttgaactcttgaacaaagtgattcaccattctgttattaaaatcctcacc 17666751  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 4678759 - 4678587
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||| |||||| |||| ||||| |||||||||||||| |||| ||||| ||||  |||||| ||| |||| |||||| | ||||||||||  | ||    
T  4678759 agtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttctttttgaactcctctacaa 4678660  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||  ||||||||||||||||||||||| || || ||||||||||||| |||||||||||| || ||||||||    
T  4678659 agtagttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggcttttacttcaaa 4678587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 34466994 - 34466822
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    |||||||| ||||| ||||| || || ||||||||||||||||| ||| | ||||| ||||||||||||| ||| | ||||||||||||||||||   ||    
T  34466994 agtgtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttgcaa 34466895  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    |||| ||| ||||||| ||||||||||| || |  || ||||||||||  |||| ||||||||| ||||||||    
T  34466894 agtggttcgccattctattatcaaagtcctctcgtccgaggtgagtgttaccagaagtggccttaacttcaaa 34466822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 15595006 - 15595169
Alignment:
Q  62 cctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtga 161  Q
    |||||||||| | || || || |||||||| |||||||||||  ||||||||||| |||||||| | ||||||||| ||||||| |||| |  |||||      
T  15595006 cctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagtag 15595105  T
Q  162 ttcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
    || |||||||||||||||||||| || || || |||||||||| |||  | |||||||| ||||    
T  15595106 ttgaccattctgttatcaaagtcctctcctccaaggtgagtgtttccgcctgtggccttaactt 15595169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 30775219 - 30775391
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    ||||||||||||||||| ||||| || |||||||||   ||||| ||| |||| |||||  |||| ||| | ||||||||| |||| || ||||  | ||    
T  30775219 agtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctctacaa 30775318  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgacttcaaa 229  Q
    ||| ||||| |||||||||||||||||| || || || | |||||||| ||||||||| || || ||||||||    
T  30775319 agtaattcaacattctgttatcaaagtcctctcccccgatgtgagtgtttccagcagttgctttaacttcaaa 30775391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 35132454 - 35132583
Alignment:
Q  96 ctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcaccgccta 195  Q
    |||||||||||||  ||||||||||| ||  | |||||||| ||||||||||| |  | |||||  ||||||||||||||||||||||| || || || |    
T  35132454 ctcaaggcttttgaattcccactaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccaccga 35132553  T
Q  196 ggtgagtgtctccagcagtggccttgactt 225  Q
    | ||||||| ||| ||||||||||| ||||    
T  35132554 gatgagtgtttccggcagtggccttaactt 35132583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 54396406 - 54396547
Alignment:
Q  73 tctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattct 172  Q
    ||||||| || ||||| || |||||||| ||| |||  || |||||||||||||  || || |||||| | ||||||   | ||| ||||||||||||||    
T  54396406 tctcacaagctgttcttaatctcctcaaagctcttgcattaccactaatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattct 54396505  T
Q  173 gttatcaaagtcttcaccgcctaggtgagtgtctccagcagt 214  Q
    ||||||||| |||||||| || || ||||| || ||||||||    
T  54396506 gttatcaaaatcttcaccaccaagatgagtatcaccagcagt 54396547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 9336088 - 9336036
Alignment:
Q  61 tcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttc 113  Q
    ||||||||||| |||||||||| |||||||||||||| |||| ||||||||||    
T  9336088 tcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttc 9336036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 23587877 - 23587801
Alignment:
Q  114 ccactaatatcctcattgttcttcctcttgaactccttcataaagtgattcaccattctgttatcaaagtcttcacc 190  Q
    |||||||||||||  || |||||||||||||| || |  | ||| || |||||||| ||||||||||| ||||||||    
T  23587877 ccactaatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacc 23587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 28219885 - 28220053
Alignment:
Q  57 agtgtcctttttgccttctcacaggccgttctcaacctcctcaaggcttttgggttcccactaatatcctcattgttcttcctcttgaactccttcataa 156  Q
    ||||||||||||||  |||  || || |||||||||||||| |||||| ||| ||| ||| |||| ||| | ||||||||| |||| |||||||     |    
T  28219885 agtgtcctttttgctctcttgcacgctgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttcttaaactcctctgcga 28219984  T
Q  157 agtgattcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggccttgactt 225  Q
    |||  |||||||| ||  |||||||||| || || || |||||||||| |||||| |||||||| ||||    
T  28219985 agtagttcaccatcctactatcaaagtcctctcccccgaggtgagtgtttccagcggtggccttcactt 28220053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 11133066 - 11133121
Alignment:
Q  162 ttcaccattctgttatcaaagtcttcaccgcctaggtgagtgtctccagcagtggc 217  Q
    ||||||||| |||||||||||||||  || || |||||||| ||||||||||||||    
T  11133066 ttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggc 11133121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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