View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11744_high_27 (Length: 223)
Name: NF11744_high_27
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 45514218 - 45514012
Alignment:
| Q |
1 |
tccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagaggttgggaagggatgtcaggtctggccactgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514218 |
tccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatccaagaggttgggaagggatgtcaggtctggccactgat |
45514119 |
T |
|
| Q |
101 |
aaagttacttatgttgagtttgagaatgttggacctggttcaaacactgatggtagagtggattggccaggtgttacagttcttcgcaacccaaacaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514118 |
aaagttacttatgttgagtttgagaatgttggacctggatcaaacactgatggtagagtggattggccaggtgttacagttcttcgcaacccaaacaaag |
45514019 |
T |
|
| Q |
201 |
cactccc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
45514018 |
cactccc |
45514012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 43699416 - 43699210
Alignment:
| Q |
1 |
tccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagaggttgggaagggatgtcaggtctggccactgat |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||||| | || ||| |||||||||||||| |||| || | ||| |||| |
|
|
| T |
43699416 |
tccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagaggttgggaacagatggagggacaacccaatgat |
43699317 |
T |
|
| Q |
101 |
aaagttacttatgttgagtttgagaatgttggacctggttcaaacactgatggtagagtggattggccaggtgttacagttcttcgcaacccaaacaaag |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||| ||||||| |||| |||||||| | || ||| |
|
|
| T |
43699316 |
aaggttacttatgtggagtttgagaatgttggacctggatctaacactgatggtagagtgaattggcctggtgttaaagttattcgcaactcggaccaag |
43699217 |
T |
|
| Q |
201 |
cactccc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
43699216 |
cactccc |
43699210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University