View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11744_high_3 (Length: 409)
Name: NF11744_high_3
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 24216652 - 24217033
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216652 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaaaagttattactggccggtggaacaaaaactcaaactcaatatcttca |
24216751 |
T |
|
| Q |
118 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttgctaaagaattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216752 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttgctaaagaattt |
24216851 |
T |
|
| Q |
218 |
gtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaactagatttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216852 |
gtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtgacatcctctctttaccaaatcttcaaaaactagatttg |
24216951 |
T |
|
| Q |
318 |
tcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctg |
399 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24216952 |
tcatcgaatcaagaccttcgtggtaaatttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctg |
24217033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 114 - 392
Target Start/End: Original strand, 16841878 - 16842162
Alignment:
| Q |
114 |
ttcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------c |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| || |||||||||| |||||||||||||| | |
|
|
| T |
16841878 |
ttcacttggaagaaactcattcataatgctactaaattaagggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttgtcaatgc |
16841977 |
T |
|
| Q |
208 |
taaagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaa |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||| |||| |||| |||||||| |||||||||||| |
|
|
| T |
16841978 |
taaacaatttgtcatcctctttggtttctcttcatctagcaaacactggtttgcaaggaaatttgttaagtgacatactctctttgtcaaatcttcaaag |
16842077 |
T |
|
| Q |
308 |
actagatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctct |
392 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16842078 |
actagatttgtcacataatcaagaccttagtggtcaacttccaaaatccaactggagcactcctctaaggtacttgtacctctct |
16842162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 120 - 402
Target Start/End: Complemental strand, 37825047 - 37824759
Alignment:
| Q |
120 |
tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| || ||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
37825047 |
tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga |
37824948 |
T |
|
| Q |
214 |
atttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaactaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||| |||||||||||||||| |||||||||| | | || |
|
|
| T |
37824947 |
atttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattgga |
37824848 |
T |
|
| Q |
314 |
tttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
37824847 |
tttgtcatttaatcataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggacctctcttcctctgctt |
37824759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 118 - 402
Target Start/End: Complemental strand, 37436861 - 37436571
Alignment:
| Q |
118 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttgc------taaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||| |||||||||||||| ||| |
|
|
| T |
37436861 |
catggaagaaactcattcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttgtcgttgttaac |
37436762 |
T |
|
| Q |
212 |
gaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaacta |
311 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | |
|
|
| T |
37436761 |
gaatttgtcatcttctttggtttctcttagtctagcatccactcagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattg |
37436662 |
T |
|
| Q |
312 |
gatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
37436661 |
gatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctt |
37436571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 120 - 402
Target Start/End: Complemental strand, 37697939 - 37697651
Alignment:
| Q |
120 |
tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| || ||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
37697939 |
tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga |
37697840 |
T |
|
| Q |
214 |
atttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaactaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||| |||||||||||||||| |||||||||| | | || |
|
|
| T |
37697839 |
atttgtcatcctctttggtttctcttagtctacgaaacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagattgga |
37697740 |
T |
|
| Q |
314 |
tttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||| | |||||| |
|
|
| T |
37697739 |
tttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttagacctctcttacactgctt |
37697651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 117 - 402
Target Start/End: Original strand, 37399817 - 37400108
Alignment:
| Q |
117 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| ||||||||||||||||| |||| |
|
|
| T |
37399817 |
acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaatgctaa |
37399916 |
T |
|
| Q |
211 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | |
|
|
| T |
37399917 |
agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt |
37400016 |
T |
|
| Q |
311 |
agatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
37400017 |
ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctt |
37400108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 117 - 402
Target Start/End: Complemental strand, 37712779 - 37712488
Alignment:
| Q |
117 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| || || ||| || ||||||| |||||||||||||||||| |||| |
|
|
| T |
37712779 |
acatggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaa |
37712680 |
T |
|
| Q |
211 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||| |||||||||||||||| |||||||||| | | |
|
|
| T |
37712679 |
agaatttgtcatcctctttggtttctcttagtctacgagacactgtgttgcaaggaaatatatcaagtgacatcctctctttacctaatcttcaaagatt |
37712580 |
T |
|
| Q |
311 |
agatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
37712579 |
ggatttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctcttcctctgctt |
37712488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 37391870 - 37392240
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||||||||||| | ||||| ||| |||||||| |||||||||| ||| || | |
|
|
| T |
37391870 |
aatattccctccacaatctctcatttgtcaaaattagtatcacttgatcttagca---attaccggcacttggaacaacaactcaaacttgatacattga |
37391966 |
T |
|
| Q |
118 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||| ||| || ||||||||||||||| ||||| |
|
|
| T |
37391967 |
catggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttgtctatgctaaa |
37392066 |
T |
|
| Q |
212 |
gaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaacta |
311 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| | | ||| |||||||||||| |||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
37392067 |
gaatgtgtcatcctctttggtttctcttaggctaggagaaattgggttgcaaggaaatttgtcaagtgccatcctctctttacctaatcttcaaagacta |
37392166 |
T |
|
| Q |
312 |
gatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacct |
388 |
Q |
| |
|
||||||||| ||| | || ||| | ||||||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
37392167 |
gatttgtca---aataatgaacttagcggtaaacttccaaaatcaaactggagcactcctctaaggtacttggacct |
37392240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 37534351 - 37533964
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca |
117 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| || ||||||| | | ||| | | ||||||||| |||| |
|
|
| T |
37534351 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatcttagcag---ttactggtccgcagaagtgggattgaaactcaattcgttca |
37534255 |
T |
|
| Q |
118 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| || || ||| || ||||||| |||||||||||||||| ||||||| |
|
|
| T |
37534254 |
tttggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaa |
37534155 |
T |
|
| Q |
212 |
gaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaacta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | |
|
|
| T |
37534154 |
gaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattg |
37534055 |
T |
|
| Q |
312 |
gatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
||||||||||| ||| | ||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37534054 |
gatttgtcatctaatgataaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttggtcctctctttctctgctt |
37533964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 120 - 402
Target Start/End: Complemental strand, 37641024 - 37640736
Alignment:
| Q |
120 |
tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||| ||||||| || | |||||||||||| ||||||| |
|
|
| T |
37641024 |
tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaaga |
37640925 |
T |
|
| Q |
214 |
atttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaactaga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | || |
|
|
| T |
37640924 |
atttgtcatcctctttggtttctcttagtctacgaaaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattgga |
37640825 |
T |
|
| Q |
314 |
tttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
37640824 |
tttgtcatttaatcaaaaccttagtggtcaacttccaaagtccaactggagcactcctctaaggtacttgaacctccgtttatctgctt |
37640736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 117 - 402
Target Start/End: Complemental strand, 37703823 - 37703532
Alignment:
| Q |
117 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||| ||||||| || | |||||||| ||| |||| |
|
|
| T |
37703823 |
acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaa |
37703724 |
T |
|
| Q |
211 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | |
|
|
| T |
37703723 |
agaatttgtcatcctctttggtttctcttagtctatcagaaactgagttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagatt |
37703624 |
T |
|
| Q |
311 |
agatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||||| ||| | ||||| ||||| ||||||||| |||||||||||| |||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
37703623 |
ggatttgtcattcaattataaccttagtggtcaacttccaaaatccaactggagctctcctctaagatacttgaacctctcttcctctgctt |
37703532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 120 - 402
Target Start/End: Complemental strand, 37595476 - 37595188
Alignment:
| Q |
120 |
tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||| ||||||| || | |||||||||||| ||||||| |
|
|
| T |
37595476 |
tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtccatgctaaaga |
37595377 |
T |
|
| Q |
214 |
atttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaactaga |
313 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| | |||||| |||||||||||| |||||||| |||||||||||||||| |||||||||| | | || |
|
|
| T |
37595376 |
atttttcatcctctttggtttctcttcttctacgaaacactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatcttcaaagattgga |
37595277 |
T |
|
| Q |
314 |
tttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
|||||||| ||| | ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
37595276 |
tttgtcatttaatgataaccttagtggtcaacttccaaagtccaacttgagcactcctctaaggtacttgaacctccgtttatctgctt |
37595188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 37430002 - 37429616
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttat---tactggccggtggaacaaaaactcaaactcaatatct |
114 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||||| ||||||| |||||| |||| | |
|
|
| T |
37430002 |
aatatttcctccacaatctctcatttgtcaaaattagtatcacttgatcttagcagttatagttactggaacatggaacagaaactcgaacttggtccac |
37429903 |
T |
|
| Q |
115 |
tcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ct |
208 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||| | |||| |||||||||||| |||||| || |
|
|
| T |
37429902 |
tcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttgtcgctgct |
37429803 |
T |
|
| Q |
209 |
aaagaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaag----taacatcctctctttaccaaatcttca |
304 |
Q |
| |
|
|| |||||| || ||||||||||| ||||| |||| || |||||| ||||||| |||| | |||| | ||||||||||||||||||||||||| |
|
|
| T |
37429802 |
aaggaatttatcgtcctctttggtcgctcttgatctatcaatcactggcttgcaagaaaattttccaagctagtgacatcctctctttaccaaatcttca |
37429703 |
T |
|
| Q |
305 |
aaaactagatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctc |
391 |
Q |
| |
|
| ||||||||||||| | ||| | |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429702 |
agaactagatttgtcttttaatgaggaccttagtgggaaacttccactgtccaactggagcactcccctaaggtacttggacctctc |
37429616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 392
Target Start/End: Original strand, 37381340 - 37381621
Alignment:
| Q |
117 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctcttt------gctaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | | | ||| || |||| || || |||| ||||||||| ||||| |
|
|
| T |
37381340 |
acatggaagaaactcattcataatgctactaatttaagggagctttctttaggttgtgtgaacatgtcctctattagagcgagctctttatctatgctaa |
37381439 |
T |
|
| Q |
211 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaact |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||| |||||||| |||||||||||||||| ||||| |||| ||| |
|
|
| T |
37381440 |
agaatttgtcatcctctttggtttctcttggtctaggagaaactgggttgcaaggaaatttgtcaagtgacatcctctctttacctaatctccaaacact |
37381539 |
T |
|
| Q |
311 |
agatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctct |
392 |
Q |
| |
|
|||||| ||||| ||| || | || | || ||||||| | ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37381540 |
agatttatcatctaataaatatctgagcagtcaacttccgaaatccaactggagcactcctttgaggtacttggacctctct |
37381621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 37412223 - 37412503
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca |
117 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| ||| | ||| |||| |||||||||||||| || ||||| |
|
|
| T |
37412223 |
aatattccttccacaatctctcacttgtcaaaattagtatcacttgatcttagcagtaa---ctgatacatggatcaaaaactcaaacttgatcccttca |
37412319 |
T |
|
| Q |
118 |
catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaa |
211 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||| |||||| | |||||| | || || ||||||| |||||||||| |||| ||||||| |
|
|
| T |
37412320 |
catggaaggaactcattcataatgttacaaatttaagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgctaaa |
37412419 |
T |
|
| Q |
212 |
gaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttacc |
295 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| |||| | |||||||||||| | ||||| |||| | ||||||||| |
|
|
| T |
37412420 |
gaatttgtcatcctctctggtctctcttagtctagggaacactagtttgcaaggaaatttagcaagtgacattccctctttacc |
37412503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 37381244 - 37381293
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatct |
67 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
37381244 |
aatattccctccacaatctctcatttgtcaaaattagtatcacttgatct |
37381293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 37412512 - 37412564
Alignment:
| Q |
342 |
aaacttccaacgtccaactggagcactcccctaaggtacttggacctctcttt |
394 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
37412512 |
aaacttccaatgttcaactggagcactcctctaaggtacttggatctctcttt |
37412564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37399736 - 37399787
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
37399736 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
37399787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37595575 - 37595524
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
37595575 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
37595524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37641123 - 37641072
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
37641123 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
37641072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37698038 - 37697987
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
37698038 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
37697987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37712869 - 37712818
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
37712869 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
37712818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37825140 - 37825091
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatct |
67 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
37825140 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatct |
37825091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37703913 - 37703862
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| || | ||||||||||||| |
|
|
| T |
37703913 |
aatactccctccacaatctctcatttgtcaaaattaatatcacttgatctta |
37703862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 37436946 - 37436894
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaa |
70 |
Q |
| |
|
|||||||| |||| ||||||||| ||||||||| |||| || ||||||||||| |
|
|
| T |
37436946 |
aatattccttccaaaatctctcatttgtcaaaattagtatcccttgatcttaa |
37436894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 117 - 402
Target Start/End: Complemental strand, 14554193 - 14553902
Alignment:
| Q |
117 |
acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg------ctaa |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||| |||||||||||||||||| |||| |
|
|
| T |
14554193 |
acatggaataaactcattcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtcaatgctaa |
14554094 |
T |
|
| Q |
211 |
agaatttgtcatcctctttggtttctcttagtctagcatccactggattgcaaggaaatatgtcaagtaacatcctctctttaccaaatcttcaaaaact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
14554093 |
agaatttgtcatcctctttggtttctcttagtctagcaaacaccgggttgcaaggaaatttgtcaagtgacatactctctttgccaaatcttcaaaaact |
14553994 |
T |
|
| Q |
311 |
agatttgtcatcgaatcaagaccttcgtggtaaacttccaacgtccaactggagcactcccctaaggtacttggacctctctttctctgctt |
402 |
Q |
| |
|
||||||| | ||| | | ||| ||||| ||||||||| ||||||||||| ||||| |||||||||||| ||||| || |||||||| |
|
|
| T |
14553993 |
agatttggtaggtaatgatggtcttagtggtcaacttccaaaatccaactggagtactcctctaaggtacttgtacctccattactctgctt |
14553902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 14554277 - 14554226
Alignment:
| Q |
18 |
aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta |
69 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
14554277 |
aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta |
14554226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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