View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_high_8 (Length: 332)
Name: NF11744_high_8
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 34477125 - 34476802
Alignment:
| Q |
1 |
cattattgtcgtgttgttgaggtgttgttcgtccgtcgtgggtggtgggttttttgcgatgggttccttgttcatccgtcatggtggtggtgttgggtcc |
100 |
Q |
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| T |
34477125 |
cattattgtcgtgttgttgaggtgttgttcgtccgtcgtgggtggtgggttttttgcgatgggttccttgttcatctgtcatggtggtggtgttgggtcc |
34477026 |
T |
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| Q |
101 |
tcacggcggtgactgttctctgccgcttgttctccgcgtttccgcccaactcgcggtggtgcgacgagatccgcctccacatcacctccaaacttccttg |
200 |
Q |
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| T |
34477025 |
tcacggcggtgactgttctctgccgcttgttctccgcgtttccgcccaactagctgtggtgcgacgagatccgcctcgacatcacctccaaacttccttg |
34476926 |
T |
|
| Q |
201 |
gggtcgcttaacatcgcttctctttggtgattcaagtgtgaaacgggtttgggttttctcaaggtggtgccgcctctcaacggcggcagttgggtgtttt |
300 |
Q |
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| T |
34476925 |
gggtcgcttaacatcgcttctctttggtgattcaagtgtgaaacaggtttgggttttctcaaggtggtgccgcctctcaacggcggcaactgggtgtttt |
34476826 |
T |
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| Q |
301 |
ggttttggagttccgttctctgct |
324 |
Q |
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| T |
34476825 |
ggttttggagttccgttttctgct |
34476802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 281
Target Start/End: Original strand, 30963431 - 30963571
Alignment:
| Q |
145 |
cccaactcgcggtggtgcgacgagatccgcctccacatcacctccaaacttccttggggtcgcttaacatcgcttctcttt-ggtgattcaagtgtgaaa |
243 |
Q |
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| T |
30963431 |
cccaaatcgcggtggtgcgacgagatccgcctccgcatcacctccaaacttccttggcca-gcttaacatcgtttctcttttggtgtttcaaatgtgaaa |
30963529 |
T |
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| Q |
244 |
cgggtttgggtt----ttctcaaggtggtgccgcctctcaac |
281 |
Q |
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| T |
30963530 |
cggggttctgttctgatcctcaaggtggtgccgcctctcaac |
30963571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 300
Target Start/End: Complemental strand, 6954865 - 6954708
Alignment:
| Q |
145 |
cccaactcgcggtggtgcgacgagatccgcctccacatcacctccaaacttccttggggtcgcttaacatcgcttctct-ttggtgattcaagtgtgaaa |
243 |
Q |
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||||||| | ||||||| ||||||||| |||| |||||||| ||||| || ||||||||||| ||| | |||||| |||||| ||||||| | ||| |
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| T |
6954865 |
cccaacttgtggtggtgtaacgagatccacctcggcatcaccttcaaacctcattggggtcgctcgacaacatttctctattggtgtttcaagtataaaa |
6954766 |
T |
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| Q |
244 |
cg-ggtttgggttttctcaaggtggtgccgcctctcaacggcggcagttgggtgtttt |
300 |
Q |
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| T |
6954765 |
caaggtttgggtttcctcacggtggtgccgcctctcaacggcggcaactgggtgtttt |
6954708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 3421077 - 3421129
Alignment:
| Q |
82 |
tggtggtggtgttgggtcctcacggcggtgactgttctctg-ccgcttgttct |
133 |
Q |
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|||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
3421077 |
tggtggtggtgttgggtcttcacggtagtgactgttctctgcccgcttgttct |
3421129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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