View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_10 (Length: 330)
Name: NF11744_low_10
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 7341449 - 7341136
Alignment:
| Q |
8 |
atggacatcattttgtcgtgcaagataaactaatttgtaatttgttagctagtannnnnnnnnnnnn------gggtctggaaacaaagtggcaagtgtc |
101 |
Q |
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| T |
7341449 |
atggtcattattttgtcgtgcaagataaactaatttgtaatttgttagctagtatttttttttttatttttttgggtctggaaacaaagtggcaagtgtc |
7341350 |
T |
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| Q |
102 |
gcgtaaaagtcacaatcgtaagatatcggcttcaaacttggatgaaagtgttcctgttatggtaccaaatgaagaaaaaccatgtcatcaaggtgaggcc |
201 |
Q |
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| T |
7341349 |
gcgtaaaactcacaatcgtaagatatcggcttcaaacttggatgaaagtgttcctgttatggtaccaaatgaagaaaaaccatgtcatcaaggtgaggcc |
7341250 |
T |
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| Q |
202 |
aataaaatggttagagaaaaagacatgttagttgatccaataattggagaaaattgataacnnnnnnnnnnnttccaatgattggaatatataagggaag |
301 |
Q |
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| T |
7341249 |
aataaaatggttagagaaaaagacatgttagttgatccaataattggagaaaattgataac-aaaaaaaaatttccaatgattggaatatataagggaag |
7341151 |
T |
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| Q |
302 |
tttgagaagagaaag |
316 |
Q |
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| T |
7341150 |
tttgagaagagaaag |
7341136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 24805371 - 24805406
Alignment:
| Q |
276 |
ccaatgattggaatatataagggaagtttgagaaga |
311 |
Q |
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| T |
24805371 |
ccaatgattggaatatataacggaagtttgagaaga |
24805406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 26765677 - 26765720
Alignment:
| Q |
274 |
ttccaatgattggaatatataagggaagtttgagaagagaaagg |
317 |
Q |
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| T |
26765677 |
ttccaatgatttgaatatataaggaaagtttgaaaagagaaagg |
26765720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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