View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_13 (Length: 317)

Name: NF11744_low_13
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_13
NF11744_low_13
[»] chr4 (7 HSPs)
chr4 (17-103)||(24482249-24482335)
chr4 (169-211)||(24481835-24481877)
chr4 (169-211)||(24481937-24481979)
chr4 (19-68)||(24482437-24482486)
chr4 (169-211)||(24481967-24482009)
chr4 (169-211)||(24482069-24482111)
chr4 (271-304)||(24481742-24481775)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 24482335 - 24482249
Alignment:
Q  17 agttccctccatataattactataaaccgccacccccatcaccgccacctccttacgattacaaattaccaccatattactacaaat 103  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24482335 agttccctccatataattactataaacctccacccccgtcaccgccacctccttatgattacaaattaccaccatattactacaaat 24482249  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 24481877 - 24481835
Alignment:
Q  169 tatgtgtacaagtcacccccacctcctccatatgtgcacaagt 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  24481877 tatgtgtacaagtcacccccacctcctccatatgtgtacaagt 24481835  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 24481979 - 24481937
Alignment:
Q  169 tatgtgtacaagtcacccccacctcctccatatgtgcacaagt 211  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  24481979 tatgtgtacaagtcacccccacctcctccatacgtgtacaagt 24481937  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24482486 - 24482437
Alignment:
Q  19 ttccctccatataattactataaaccgccacccccatcaccgccacctcc 68  Q
    |||||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  24482486 ttccctccatataattactataaatctccaccaccatcaccaccacctcc 24482437  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 24482009 - 24481967
Alignment:
Q  169 tatgtgtacaagtcacccccacctcctccatatgtgcacaagt 211  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||    
T  24482009 tatgtatacaagtcaccgccacctcctccatatgtgtacaagt 24481967  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 24482111 - 24482069
Alignment:
Q  169 tatgtgtacaagtcacccccacctcctccatatgtgcacaagt 211  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||    
T  24482111 tatgtatacaagtcacccccacctcctccatacgtgtacaagt 24482069  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 24481775 - 24481742
Alignment:
Q  271 tacgtatacaaatcaccacctcctccaccctatg 304  Q
    ||||||||||||||||||||||||||||| ||||    
T  24481775 tacgtatacaaatcaccacctcctccaccttatg 24481742  T

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