View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_14 (Length: 302)
Name: NF11744_low_14
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 32614447 - 32614166
Alignment:
| Q |
1 |
aaaattctttaaaagcacttgtttacacttagtaaacgatatcggccattaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32614447 |
aaaattctttaaaagcacttgtttacacttggtaaactatatcggccattaatttgacatcggacaaatcaaattacacaataacaaaatcaactttaaa |
32614348 |
T |
|
| Q |
101 |
cgatctcaatcattaatttgagatttgagatcagatagtcatattaaattatgtttggcgtagtaaatacaccaaatccaaatttaaaactatgattcac |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32614347 |
cgatctcaatcattaatttgagat-------cagatagtcatattaaatt---tttggcgtagtaaatacaccaaatccaaatttaaaactatgattcac |
32614258 |
T |
|
| Q |
201 |
taaactatacagatctttttactatatcatgaaaataatgttcaaatatgaagtatctgtttgttggtatatataataatgtttggcctttg |
292 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32614257 |
taaactatacagatctttttacgatatcatgaaaataatgttcaaatatgaagtatctgtttgttagtatatataataatgtttggcctttg |
32614166 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 30241519 - 30241592
Alignment:
| Q |
33 |
taaacgatatcggccattaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatctc |
107 |
Q |
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| T |
30241519 |
taaacgatcttgaccattaatctgaaatcagacatctcagattacacaataacaaaa-caactttaaacgatctc |
30241592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 50488231 - 50488179
Alignment:
| Q |
73 |
attacacaataacaaaatcaactttaaacgatctcaatcattaatttgagatt |
125 |
Q |
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| T |
50488231 |
attacacaataccaaaatcaattttaaacgatctcgactgttaatttgagatt |
50488179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 23344106 - 23344163
Alignment:
| Q |
49 |
ttaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatct |
106 |
Q |
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| T |
23344106 |
ttaatttgagatcggacaattcagattacacaataacaaaatcaagtttaaacgatct |
23344163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 30000755 - 30000664
Alignment:
| Q |
33 |
taaacgatatcggccattaatttgaaatcagacaaatcaaattacacaataacaaaatcaactttaaacgatctcaatcattaatttgagat |
124 |
Q |
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|||||||| || ||||||||||||||| ||||| |||||||||| |||||||||||| || |||| ||||| | | |||||||||||| |
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| T |
30000755 |
taaacgatctcagccattaatttgaaaccagactgtccaaattacacgataacaaaatcattttcaaacaatctcgaccgttaatttgagat |
30000664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 18169927 - 18169971
Alignment:
| Q |
49 |
ttaatttgaaatcagacaaatcaaattacacaataacaaaatcaa |
93 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
18169927 |
ttaatttaaaatcagacggctcaaattacacaataacaaaatcaa |
18169971 |
T |
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