View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_15 (Length: 301)
Name: NF11744_low_15
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 33116993 - 33117137
Alignment:
| Q |
19 |
ctttgtcctcgttttcgtacctgaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataag |
118 |
Q |
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| T |
33116993 |
ctttgtcctcgttttcgtaccagaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataag |
33117092 |
T |
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| Q |
119 |
agaatcacctctcagaagggttgagtcagtttgagttagtttatg |
163 |
Q |
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| T |
33117093 |
agaatcgcctctcagaagggttgagtcagtttgagttagtttatg |
33117137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 33117205 - 33117260
Alignment:
| Q |
246 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaatt |
301 |
Q |
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| T |
33117205 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaatt |
33117260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 33117131 - 33117163
Alignment:
| Q |
175 |
gtttatgactattttcttaggatctgcattaat |
207 |
Q |
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| T |
33117131 |
gtttatgactattttcttaggatctgcattaat |
33117163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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