View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_17 (Length: 254)
Name: NF11744_low_17
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34281847 - 34282089
Alignment:
| Q |
1 |
tcaacattaatgtaacaaattaaattcttataatatatttcctcaaaaacgattaaatctatataacatatacttcaaatcatttnnnnnnnnnnn---- |
96 |
Q |
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| T |
34281847 |
tcaacattaatgtaacaaattaaattcttataatatatttcctcaaaaaa-attaaatctatataacatatatatcaaatcatttaaaaaaattaaaatt |
34281945 |
T |
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| Q |
97 |
-tgtaatacttaccttcatatatttttcttcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaactt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
34281946 |
ttgtaatacttaccttcatatatttttcttcaacaatttcaattgcgagatactctaagttagggcaactcgttagcataaatgtgatttcctcaaactt |
34282045 |
T |
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| Q |
196 |
aaactggtgcaaagaggtcttcattatcaaatgtttcaccttca |
239 |
Q |
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||||| || |||||||||||||||||||||||||||||||||| |
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| T |
34282046 |
aaactaatgtaaagaggtcttcattatcaaatgtttcaccttca |
34282089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 34288358 - 34288501
Alignment:
| Q |
97 |
tgtaatacttaccttcatatatttttcttcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaactta |
196 |
Q |
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| T |
34288358 |
tgtaatacttacattcatatattttttctcaacaatttcaattgtgagatgctctaggttagggcagctctttagcatgaatgcgattccctcaaactca |
34288457 |
T |
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| Q |
197 |
aactggtgcaaagaggtcttcattatcaaatgtttcaccttcat |
240 |
Q |
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| T |
34288458 |
agcgggtgcaaaaaggtcttcattatcaaatgtttcaccttcat |
34288501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 34297661 - 34297809
Alignment:
| Q |
97 |
tgtaatacttaccttcatatatttttcttcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaactta |
196 |
Q |
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|||| ||||||| ||||||||| ||| |||||||||||||||| ||||| ||| | || ||| | || || |||| ||||||||| ||| ||||| | |
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| T |
34297661 |
tgtattacttacattcatatatcttttctcaacaatttcaattgtgagatgctcaagattggggcagctgtttagcatgaatgtgattccctaaaactca |
34297760 |
T |
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| Q |
197 |
aactggtgcaaagaggtcttcattatcaaatgtttcaccttcatctcat |
245 |
Q |
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| T |
34297761 |
aactggtgcaaagaggtcttcattatcatatgtttcaccttcatgtcat |
34297809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34288270 - 34288339
Alignment:
| Q |
15 |
acaaattaaattcttataatatatttcctcaaaaacgattaaatctatataacatatacttcaaatcatt |
84 |
Q |
| |
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|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
34288270 |
acaaattaaattcttataatatatgccctcttaaaaaattaaatctatataacatatacaccaaatcatt |
34288339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 34297562 - 34297644
Alignment:
| Q |
4 |
acattaatgta-acaaattaaattcttataatatatttcctcaaaaacgattaaatctatataacatatacttcaaatcattt |
85 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||| ||| |||| |||||||||||||||||| ||| |||||||||| |
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| T |
34297562 |
acattaatgtatacaaatcaaattcttataatatataccctgtaaaaaaattaaatctatataacatgtacagcaaatcattt |
34297644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 10330851 - 10330966
Alignment:
| Q |
125 |
tcaacaatttcaattgcgagatactctaagttagggaaactcgtttgcataaatgtgatttcctcaaacttaaactggtgcaaagaggtcttcattatca |
224 |
Q |
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|||||||||||||||| |||| ||||||| ||| ||||| || |||| |||| |||| || ||||| ||| | |||||||| ||||||||||||| |
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| T |
10330851 |
tcaacaatttcaattgtgagacgttctaagtcggggcaactctttagcatgaatgagattcccataaactcaaatttgtgcaaagcagtcttcattatca |
10330950 |
T |
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| Q |
225 |
aatgtttcaccttcat |
240 |
Q |
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|||| |||||| |||| |
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| T |
10330951 |
aatgcttcaccctcat |
10330966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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