View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_19 (Length: 244)

Name: NF11744_low_19
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_19
NF11744_low_19
[»] chr3 (8 HSPs)
chr3 (18-227)||(34477579-34477788)
chr3 (23-225)||(34372745-34372955)
chr3 (26-227)||(34467625-34467834)
chr3 (18-226)||(34473631-34473847)
chr3 (113-227)||(27625796-27625910)
chr3 (113-227)||(34511569-34511683)
chr3 (18-110)||(34376104-34376196)
chr3 (18-97)||(34462643-34462722)
[»] chr2 (2 HSPs)
chr2 (18-225)||(10533186-10533388)
chr2 (18-225)||(10526364-10526579)
[»] scaffold1215 (1 HSPs)
scaffold1215 (18-225)||(358-573)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 34477788 - 34477579
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcatctct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34477788 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttctatctgaatttaataacagtgtaactcatctct 34477689  T
Q  118 acagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctca 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34477688 acagttaataaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctca 34477589  T
Q  218 attatctgtg 227  Q
    ||||||||||    
T  34477588 attatctgtg 34477579  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 34372745 - 34372955
Alignment:
Q  23 aaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcat--------c 114  Q
    |||||||||||||  | |||||||  ||||||||||||| | |||| | |||||||||| | |||||||| |||| | || ||||| | ||        |    
T  34372745 aaggtatgatcctgcttttggataatttataaatatcaattgtactcatgagtgaaaatgtctatctgaaattaagatcattgtaaattattcattgttc 34372844  T
Q  115 tctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttc 214  Q
    |||||| ||||| ||| |||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  34372845 tctacatttaataaaaatattgcttcttgtggtatggaaaattatgcacctgatggtgttaccatggatttccaaattattgtactttacagtacatttc 34372944  T
Q  215 tcaattatctg 225  Q
    ||| |||||||    
T  34372945 tcagttatctg 34372955  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 34467834 - 34467625
Alignment:
Q  26 gtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcat--------ctct 117  Q
    |||||||||| ||||||||||||||||||||||||||||| || | ||| ||||||   ||||||||||||||| |  ||| ||||||        ||||    
T  34467834 gtatgatcctgttcttggatatgttataaatatcaactatgctcatgagggaaaatgcctatctgaatttaatatcgttgttactcattcattgttctct 34467735  T
Q  118 acagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctca 217  Q
    ||| ||||| ||| ||||| |||||||||||| |||||| || ||||  ||||||||||||| |||||||| ||||||| ||||| || |||||||||||    
T  34467734 acatttaataaaaatattgtttcttgtggtatggaaaatcatatacctaatggtgttaccatagatttccagattattgtactttatattacatttctca 34467635  T
Q  218 attatctgtg 227  Q
    | ||| ||||    
T  34467634 actatttgtg 34467625  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 34473847 - 34473631
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcatc--- 114  Q
    |||| |||||||||||||  | || ||||||||||||||||||| ||| || | |||| ||||| | |||||||| |||||| || |||||||| |        
T  34473847 ggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcac 34473748  T
Q  115 -----tctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtac 209  Q
         |||||| | | | ||| |||||||||||||||| | |||||||||| ||| |||||||||| ||  |||||||||||||||| ||||| ||||||    
T  34473747 tgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtac 34473648  T
Q  210 atttctcaattatctgt 226  Q
    |||||||||||||||||    
T  34473647 atttctcaattatctgt 34473631  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 27625910 - 27625796
Alignment:
Q  113 tctctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatt 212  Q
    |||||||| ||||| ||| ||||| ||||||| |||| ||||||||||||||  ||||||||||||| |||||||||||||||| ||||| || ||||||    
T  27625910 tctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggtgttaccatagatttccaaattattgtactttatattacatt 27625811  T
Q  213 tctcaattatctgtg 227  Q
    |||||||||| ||||    
T  27625810 tctcaattatttgtg 27625796  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 34511683 - 34511569
Alignment:
Q  113 tctctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatt 212  Q
    |||||||| ||||| ||| ||||| ||||||| |||| ||||||||||||||  |||||| |||||| |||||||||||||||| ||||| || ||||||    
T  34511683 tctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggtgctaccatagatttccaaattattgtactttatattacatt 34511584  T
Q  213 tctcaattatctgtg 227  Q
    |||||||||| ||||    
T  34511583 tctcaattatttgtg 34511569  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 34376104 - 34376196
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaact 110  Q
    |||| ||||||||| | | ||||||||||| |||||||||||||||||||| | |||||||||||| ||||| ||||||||| || |||||||    
T  34376104 ggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcatgagtgaaaatttctatcttaatttaatatcattgtaact 34376196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 34462722 - 34462643
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaa 97  Q
    |||| ||||||||||  | |||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||||    
T  34462722 ggaaaaaggtatgatgttgttcttggatatgttataaatatcaactatactcacgatagaaaatttctatctgaatttaa 34462643  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 10533388 - 10533186
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcatctct 117  Q
    |||| |||||||||||||  | ||||||| |||||||||||||||| |||| |||||||||||| | |||||||| |||||| || ||||||||     |    
T  10533388 ggaaaaaggtatgatcctgcttttggataagttataaatatcaactgtactcacgagtgaaaatgtctatctgaagttaatatcattgtaactc-----t 10533294  T
Q  118 acagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctca 217  Q
     || ||||| ||| |||||||||||||||||| |||||||| | ||| ||||| ||||| || |||||||||||||||| |||||  ||||||||||||     
T  10533293 gcatttaataaaaatattgcttcttgtggtatggaaaattaggcacctgatggcgttacgatagatttccaaattattgtactttacagtacatttctcg 10533194  T
Q  218 attatctg 225  Q
     |||||||    
T  10533193 gttatctg 10533186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 10526579 - 10526364
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcatc--- 114  Q
    |||| |||||||||||||  | || |||| | |||||||||||||| |||| | |||||||||| | |||||||| ||||||  | |||||||||||       
T  10526579 ggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccat 10526480  T
Q  115 -----tctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtac 209  Q
         ||| || ||||| ||| |||||||||||||||| | |||||||||| ||| ||||||| |||||| |||||||||||||||| |||||  | |||    
T  10526479 tgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatac 10526380  T
Q  210 atttctcaattatctg 225  Q
    |||||||| |||||||    
T  10526379 atttctcagttatctg 10526364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 573 - 358
Alignment:
Q  18 ggaataaggtatgatccttttcttggatatgttataaatatcaactatacttacgagtgaaaatttttatctgaatttaataacagtgtaactcatc--- 114  Q
    |||| |||||||||||||  | || |||| | |||||||||||||| |||| | |||||||||| | |||||||| ||||||  | |||||||||||       
T  573 ggaaaaaggtatgatcctgctttttgataagctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccat 474  T
Q  115 -----tctacagttaattaaattattgcttcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtac 209  Q
         ||| || ||||| ||| |||||||||||||||| | |||||||||| ||| ||||||| |||||| |||||||||||||||| |||||  | |||    
T  473 tgttctctgcatttaataaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatac 374  T
Q  210 atttctcaattatctg 225  Q
    |||||||| |||||||    
T  373 atttctcagttatctg 358  T

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