View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_2 (Length: 463)

Name: NF11744_low_2
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_2
NF11744_low_2
[»] chr2 (1 HSPs)
chr2 (1-445)||(42788608-42789047)
[»] chr8 (14 HSPs)
chr8 (218-307)||(5920637-5920726)
chr8 (218-307)||(5983821-5983910)
chr8 (3-118)||(5921160-5921275)
chr8 (218-307)||(5959303-5959392)
chr8 (218-330)||(5842538-5842650)
chr8 (242-330)||(5849248-5849336)
chr8 (218-309)||(5886857-5886948)
chr8 (218-320)||(5948195-5948297)
chr8 (3-118)||(5887188-5887303)
chr8 (3-118)||(5984580-5984695)
chr8 (15-72)||(5960363-5960420)
chr8 (15-118)||(5949052-5949155)
chr8 (1-58)||(5849851-5849908)
chr8 (1-58)||(5843109-5843166)
[»] chr1 (3 HSPs)
chr1 (223-310)||(51044664-51044751)
chr1 (243-287)||(49848563-49848607)
chr1 (3-47)||(37962880-37962924)
[»] chr3 (1 HSPs)
chr3 (223-310)||(34626429-34626516)
[»] chr7 (1 HSPs)
chr7 (248-286)||(47813441-47813479)
[»] chr5 (1 HSPs)
chr5 (3-41)||(2590858-2590896)


Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 42789047 - 42788608
Alignment:
Q  1 aaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789047 aaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccat 42788948  T
Q  101 tctaggaaacaggtatatactatactatatacctctaattcatctttattttcatttttaaacaatattattgctctttctttgatatcaatcttaacaa 200  Q
    ||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788947 tctaggaaacaggtatatactata-----taactctaattcatctttattttcatttttaaacaatattattgctctttctttgatatcaatcttaacaa 42788853  T
Q  201 gaaattatggtttggaattggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42788852 gaaattatggtttggaattggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaa 42788753  T
Q  301 gaagaaactactttcacatgattttgttcccacttctttagccacattttctgatattcactgtcctagaaatagttccgttgaaagtttcttcccttta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  42788752 gaagaaactactttcacatgattttgttcccacttctttagccacattttctgatattcactgtcctagaaatggttctgttgaaagtttcttcccttta 42788653  T
Q  401 tttaatgacaatcctatccttaactccaatcatcaatatcacttt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42788652 tttaatgacaatcctatccttaactccaatcatcaatatcacttt 42788608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 5920726 - 5920637
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaa 307  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  5920726 ttggacaggtgggctcagattgcgaagcacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccatgaagaagaaa 5920637  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 5983910 - 5983821
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaa 307  Q
    |||||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  5983910 ttggacagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattcaaccataaagaagaaa 5983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 5921275 - 5921160
Alignment:
Q  3 agttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattc 102  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| || ||| | ||||| || | |||||    
T  5921275 agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattctagaactccacagcattc 5921176  T
Q  103 taggaaacaggtatat 118  Q
    |||| || ||||||||    
T  5921175 taggcaataggtatat 5921160  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 5959392 - 5959303
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaa 307  Q
    |||||||| ||||||||||| ||||| || ||| | ||||||||||||||||||||||| |||||||||||||| | |||||||||||||    
T  5959392 ttggacagatgggctcagattgcaaaacacttaactggaagaacagataatgaggtgaaaaacttttggaattctaccataaagaagaaa 5959303  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 5842650 - 5842538
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcac 317  Q
    |||||||| ||||| || || || ||| | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||      
T  5842650 ttggacagatgggcacaaattgccaagtacttgccaggaagaaccgataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctg 5842551  T
Q  318 atgattttgttcc 330  Q
    ||||| |||||||    
T  5842550 atgatattgttcc 5842538  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 5849336 - 5849248
Alignment:
Q  242 aagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcacatgattttgttcc 330  Q
    ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||  ||||| |||||||    
T  5849336 aagcacttgccaggaagaacggataatgaggtgaaaaacttttggaattcaagcataaagaaaaaactcctttctgatgatattgttcc 5849248  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 5886948 - 5886857
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaact 309  Q
    |||||||| ||||| || || || ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  5886948 ttggacagatgggcacaaattgctaagcacttaccaggaagaacggataatgaggtgaaaaacttttggaattcaagcatgaagaaaaaact 5886857  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 5948297 - 5948195
Alignment:
Q  218 ttggacaggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaactactttcac 317  Q
    |||||||| |||||||| || |||||||| ||||| |||||||||||||||||| | || |||||||||||||||| ||||||||| ||| | ||||| |    
T  5948297 ttggacagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaaaaatcctttctc 5948198  T
Q  318 atg 320  Q
    |||    
T  5948197 atg 5948195  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 5887303 - 5887188
Alignment:
Q  3 agttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattc 102  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || ||| | ||||| || | |||||    
T  5887303 agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattc 5887204  T
Q  103 taggaaacaggtatat 118  Q
    |||| || ||||||||    
T  5887203 taggcaataggtatat 5887188  T

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Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 5984695 - 5984580
Alignment:
Q  3 agttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattc 102  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || ||| | ||||| || | |||||    
T  5984695 agttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattc 5984596  T
Q  103 taggaaacaggtatat 118  Q
    |||| || ||||||||    
T  5984595 taggcaataggtatat 5984580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 5960420 - 5960363
Alignment:
Q  15 agatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaag 72  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  5960420 agatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaag 5960363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 5949155 - 5949052
Alignment:
Q  15 agatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattctaggaaacaggt 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || ||| | ||||| || | ||||||||| || ||||    
T  5949155 agatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattgtagaactacacaacattctaggcaataggt 5949056  T
Q  115 atat 118  Q
    ||||    
T  5949055 atat 5949052  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5849908 - 5849851
Alignment:
Q  1 aaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagttt 58  Q
    ||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||    
T  5849908 aaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagttt 5849851  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5843166 - 5843109
Alignment:
Q  1 aaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagttt 58  Q
    ||||||| || || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  5843166 aaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagttt 5843109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 51044664 - 51044751
Alignment:
Q  223 caggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaacta 310  Q
    |||||||||||| || |||   || |||||||| ||||||||||||||| | || |||||||||||||||||  | ||||||||||||    
T  51044664 caggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaacta 51044751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 49848607 - 49848563
Alignment:
Q  243 agcatttaccaggaagaacagataatgaggtgaagaacttttgga 287  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||    
T  49848607 agcatttaccaggaagaacagataatgagataaagaactattgga 49848563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 37962880 - 37962924
Alignment:
Q  3 agttgcaggttgagatggataaattatttaagacctgatttgaaa 47  Q
    ||||||||||| |||||||||||||| || || ||||||||||||    
T  37962880 agttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 34626516 - 34626429
Alignment:
Q  223 caggtgggctcagatagcaaagcatttaccaggaagaacagataatgaggtgaagaacttttggaattcaagcataaagaagaaacta 310  Q
    |||||||||||| || |||   || |||||||| ||||| ||||||||| | || |||||||||||||||||  | ||||||||||||    
T  34626516 caggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaacta 34626429  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 47813441 - 47813479
Alignment:
Q  248 ttaccaggaagaacagataatgaggtgaagaacttttgg 286  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  47813441 ttaccaggacgaacagataatgaagtgaagaacttttgg 47813479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 2590858 - 2590896
Alignment:
Q  3 agttgcaggttgagatggataaattatttaagacctgat 41  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  2590858 agttgtaggttgagatggataaattatttaaggcctgat 2590896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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