View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_20 (Length: 244)

Name: NF11744_low_20
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_20
NF11744_low_20
[»] chr4 (2 HSPs)
chr4 (18-227)||(24216652-24216861)
chr4 (114-206)||(16841878-16841970)
[»] chr5 (22 HSPs)
chr5 (18-206)||(37391870-37392055)
chr5 (118-206)||(37436773-37436861)
chr5 (120-227)||(37697826-37697939)
chr5 (120-227)||(37824934-37825047)
chr5 (18-230)||(37412223-37412438)
chr5 (117-227)||(37399817-37399933)
chr5 (18-206)||(37429811-37430002)
chr5 (117-227)||(37712663-37712779)
chr5 (18-227)||(37534139-37534351)
chr5 (120-227)||(37640911-37641024)
chr5 (117-162)||(37381340-37381385)
chr5 (117-227)||(37703707-37703823)
chr5 (120-206)||(37595390-37595476)
chr5 (18-67)||(37381244-37381293)
chr5 (18-69)||(37399736-37399787)
chr5 (18-69)||(37595524-37595575)
chr5 (18-69)||(37641072-37641123)
chr5 (18-69)||(37697987-37698038)
chr5 (18-69)||(37712818-37712869)
chr5 (18-67)||(37825091-37825140)
chr5 (18-69)||(37703862-37703913)
chr5 (18-70)||(37436894-37436946)
[»] chr3 (2 HSPs)
chr3 (117-227)||(14554077-14554193)
chr3 (18-69)||(14554226-14554277)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 24216652 - 24216861
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24216652 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaaaagttattactggccggtggaacaaaaactcaaactcaatatcttca 24216751  T
Q  118 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttgctaaagaattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  24216752 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacatatcttcaatcagagagagctctttgctaaagaattt 24216851  T
Q  218 gtcatcctct 227  Q
    ||||||||||    
T  24216852 gtcatcctct 24216861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 16841878 - 16841970
Alignment:
Q  114 ttcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg 206  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| || ||||||||||  ||||||||||||||    
T  16841878 ttcacttggaagaaactcattcataatgctactaaattaagggatctttatctaaatggagtgaacatgtcttcaattggagagagctctttg 16841970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 37391870 - 37392055
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca 117  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||  |   ||||| |||   |||||||| ||||||||||  |||  || |    
T  37391870 aatattccctccacaatctctcatttgtcaaaattagtatcacttgatcttagca---attaccggcacttggaacaacaactcaaacttgatacattga 37391966  T
Q  118 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||  ||| ||| || |||||||||||||||    
T  37391967 catggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagagtggatatgtattccattagagagagctctttg 37392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 37436861 - 37436773
Alignment:
Q  118 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |  ||||||||||  ||||||||||||||    
T  37436861 catggaagaaactcattcataatgctactaatttaagggagcttcatctgaatggagtgaaaatgtcttcaattggagagagctctttg 37436773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 37697939 - 37697826
Alignment:
Q  120 tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaaga 213  Q
    |||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| || ||||||||||| |||||||||| |      |||||||||    
T  37697939 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37697840  T
Q  214 atttgtcatcctct 227  Q
    ||||||||||||||    
T  37697839 atttgtcatcctct 37697826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 37825047 - 37824934
Alignment:
Q  120 tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaaga 213  Q
    |||||||||||||||||||||||||||||||||||||| ||| | || ||||||||| || ||||||||||| |||||||||| |      |||||||||    
T  37825047 tggaagaaactcattcataatgctactaatttaagggatcttcatcttaatggagtgaacatgtcttcaatcggagagagctcattgtcaatgctaaaga 37824948  T
Q  214 atttgtcatcctct 227  Q
    ||||||||||||||    
T  37824947 atttgtcatcctct 37824934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 37412223 - 37412438
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca 117  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||  ||| |   |||     |||| ||||||||||||||  ||  |||||    
T  37412223 aatattccttccacaatctctcacttgtcaaaattagtatcacttgatcttagcagtaa---ctgatacatggatcaaaaactcaaacttgatcccttca 37412319  T
Q  118 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaa 211  Q
    |||||||| ||||||||||||||| ||| |||||||| |||||| | |||||| | || ||  ||||||| ||||||||||  ||||      |||||||    
T  37412320 catggaaggaactcattcataatgttacaaatttaagcgagcttcatctgaatagtgttgatatgtcttccatcagagagaattctttgtcgctgctaaa 37412419  T
Q  212 gaatttgtcatcctctctg 230  Q
    |||||||||||||||||||    
T  37412420 gaatttgtcatcctctctg 37412438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 37399817 - 37399933
Alignment:
Q  117 acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||   ||| || |||||||  |||||||||||||||      ||||||    
T  37399817 acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatattgtgaacatgtcttccctcagagagagctctttgtcaatgctaa 37399916  T
Q  211 agaatttgtcatcctct 227  Q
    |||||||||||||||||    
T  37399917 agaatttgtcatcctct 37399933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 37430002 - 37429811
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttat---tactggccggtggaacaaaaactcaaactcaatatct 114  Q
    |||||| |||||||||||||||| ||||||||| |||| |||||||||||||  ||||||   ||||||    ||||||| |||||| ||||   |        
T  37430002 aatatttcctccacaatctctcatttgtcaaaattagtatcacttgatcttagcagttatagttactggaacatggaacagaaactcgaacttggtccac 37429903  T
Q  115 tcacatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg 206  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |  |||||   |||||  | |||| |||||||||||| ||||||    
T  37429902 tcacatggaagaaactcattcttaatgctactaatttaagggagcttcatttgaatactgtggatatatctttaatcagagagagatctttg 37429811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 37712779 - 37712663
Alignment:
Q  117 acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  || ||   ||| || ||||||| ||||||||||||||||      ||||||    
T  37712779 acatggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaa 37712680  T
Q  211 agaatttgtcatcctct 227  Q
    |||||||||||||||||    
T  37712679 agaatttgtcatcctct 37712663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 37534351 - 37534139
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaatagttattactggccggtggaacaaaaactcaaactcaatatcttca 117  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||  ||   ||||||| | |  |||     | | |||||||||   ||||    
T  37534351 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatcttagcag---ttactggtccgcagaagtgggattgaaactcaattcgttca 37534255  T
Q  118 catggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaa 211  Q
      |||||||||||||||||||||||||||||||||||||| |||||  || ||   ||| || ||||||| ||||||||||||||||      |||||||    
T  37534254 tttggaagaaactcattcataatgctactaatttaagggaactttatttggataatgtgaacatgtcttccatcagagagagctctttgtcaatgctaaa 37534155  T
Q  212 gaatttgtcatcctct 227  Q
    ||||||||||||||||    
T  37534154 gaatttgtcatcctct 37534139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 37641024 - 37640911
Alignment:
Q  120 tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaaaga 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||||| | |||||  ||||||| || |  ||||||||||      |||||||||    
T  37641024 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttgtcaatgctaaaga 37640925  T
Q  214 atttgtcatcctct 227  Q
    ||||||||||||||    
T  37640924 atttgtcatcctct 37640911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 37381340 - 37381385
Alignment:
Q  117 acatggaagaaactcattcataatgctactaatttaagggagcttt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37381340 acatggaagaaactcattcataatgctactaatttaagggagcttt 37381385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 37703823 - 37703707
Alignment:
Q  117 acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||| | |||||  ||||||| || |  |||||||| |      ||||||    
T  37703823 acatggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctcattgtcaatgctaa 37703724  T
Q  211 agaatttgtcatcctct 227  Q
    |||||||||||||||||    
T  37703723 agaatttgtcatcctct 37703707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 37595476 - 37595390
Alignment:
Q  120 tggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||||| | |||||  ||||||| || |  ||||||||||||    
T  37595476 tggaagaaactcattcataatgctactaatttaagggagcttcatttgaatagtgtggatatgtcttccattacggagagctctttg 37595390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 37381244 - 37381293
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatct 67  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  37381244 aatattccctccacaatctctcatttgtcaaaattagtatcacttgatct 37381293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37399736 - 37399787
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  37399736 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 37399787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37595575 - 37595524
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  37595575 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 37595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37641123 - 37641072
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  37641123 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 37641072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37698038 - 37697987
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  37698038 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 37697987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37712869 - 37712818
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  37712869 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 37712818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 37825140 - 37825091
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatct 67  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||    
T  37825140 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatct 37825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 37703913 - 37703862
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||| |||||||||||||||||| ||||||||| || | |||||||||||||    
T  37703913 aatactccctccacaatctctcatttgtcaaaattaatatcacttgatctta 37703862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 37436946 - 37436894
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatcttaa 70  Q
    |||||||| |||| ||||||||| ||||||||| |||| || |||||||||||    
T  37436946 aatattccttccaaaatctctcatttgtcaaaattagtatcccttgatcttaa 37436894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 14554193 - 14554077
Alignment:
Q  117 acatggaagaaactcattcataatgctactaatttaagggagctttacctgaatggagtggacctgtcttcaatcagagagagctctt------tgctaa 210  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||||||||||||      ||||||    
T  14554193 acatggaataaactcattcataatgctactaatttaagggatctttatctgaatggagtgaacatgtcttccatcagagagagctctttgtcaatgctaa 14554094  T
Q  211 agaatttgtcatcctct 227  Q
    |||||||||||||||||    
T  14554093 agaatttgtcatcctct 14554077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 14554277 - 14554226
Alignment:
Q  18 aatattccctccacaatctctcagttgtcaaaactagtgtcacttgatctta 69  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  14554277 aatattccttccacaatctctcatttgtcaaaattagtatcacttgatctta 14554226  T

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