View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_24 (Length: 241)

Name: NF11744_low_24
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_24
NF11744_low_24
[»] chr7 (21 HSPs)
chr7 (1-223)||(8545912-8546134)
chr7 (1-223)||(8581980-8582202)
chr7 (4-223)||(8576609-8576828)
chr7 (1-219)||(8570591-8570809)
chr7 (4-223)||(8559616-8559835)
chr7 (1-178)||(8538316-8538493)
chr7 (1-193)||(7877429-7877621)
chr7 (33-205)||(29581525-29581697)
chr7 (1-193)||(8602254-8602446)
chr7 (33-176)||(29577382-29577525)
chr7 (57-222)||(8636010-8636175)
chr7 (28-187)||(8610224-8610383)
chr7 (57-196)||(8590974-8591113)
chr7 (1-193)||(8382572-8382764)
chr7 (1-196)||(10494067-10494262)
chr7 (57-194)||(13333151-13333288)
chr7 (1-138)||(27830626-27830763)
chr7 (33-223)||(8647189-8647379)
chr7 (9-94)||(6789800-6789885)
chr7 (119-223)||(8640212-8640316)
chr7 (57-170)||(8585425-8585538)
[»] chr8 (2 HSPs)
chr8 (9-223)||(12528792-12529006)
chr8 (58-166)||(43745184-43745292)
[»] chr5 (2 HSPs)
chr5 (9-138)||(28220239-28220368)
chr5 (78-166)||(42555667-42555755)
[»] chr4 (2 HSPs)
chr4 (16-196)||(35132743-35132921)
chr4 (9-132)||(30775540-30775663)
[»] chr1 (2 HSPs)
chr1 (9-223)||(15595329-15595541)
chr1 (57-170)||(34466512-34466625)
[»] chr2 (7 HSPs)
chr2 (9-170)||(7542514-7542675)
chr2 (34-138)||(12258332-12258436)
chr2 (6-170)||(16657236-16657400)
chr2 (40-138)||(14703727-14703825)
chr2 (57-170)||(12245125-12245238)
chr2 (9-166)||(12234977-12235134)
chr2 (57-126)||(16661755-16661824)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8545912 - 8546134
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8545912 tccgcatgacatttagaccggcaatttcacctgcatcttttgtggatctttgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 8546011  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546012 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttc 8546111  T
Q  201 acaagaattgtcggtttgtcatt 223  Q
    |||||||||||||||||||||||    
T  8546112 acaagaattgtcggtttgtcatt 8546134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8581980 - 8582202
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8581980 tccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 8582079  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  8582080 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgtcagaataacagatgatatttcttcagcaagaaagtgtttttccttacccttgtagttc 8582179  T
Q  201 acaagaattgtcggtttgtcatt 223  Q
    ||||  |||||||||||||||||    
T  8582180 acaacgattgtcggtttgtcatt 8582202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 8576609 - 8576828
Alignment:
Q  4 gcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacagg 103  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  8576609 gcatgacattgagaccagcaattgcacctgcatctttagtggctcttcgttgggaatcattaaaataagcaggcacagaaatcactgcattcttaacagg 8576708  T
Q  104 tgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcaca 203  Q
    || || || ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  8576709 tgtctgcagaaaagcctctgcaatctctcgcatctttgagagaatcacagatgatatttcttcagcaacaaagcgtttttcctcacctttgtagttcaca 8576808  T
Q  204 agaattgtcggtttgtcatt 223  Q
    |  |||||||||||||||||    
T  8576809 acgattgtcggtttgtcatt 8576828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8570591 - 8570809
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8570591 tccgcattacattgagaccagcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 8570690  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttc 200  Q
    ||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||  | ||||||| |||| |||| |||    
T  8570691 aggagactccaaaaatgcttctgcaatctctcgcatctttgagagaatcacagatgatatttcttcagctacaaaacgtttttccttacccatgtacttc 8570790  T
Q  201 acaagaattgtcggtttgt 219  Q
    ||||  ||||| |||||||    
T  8570791 acaatgattgttggtttgt 8570809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 8559616 - 8559835
Alignment:
Q  4 gcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacagg 103  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||| ||| |     
T  8559616 gcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcattaaaataagcaggtacggtaatcacagcattctcaaccgt 8559715  T
Q  104 tgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcaca 203  Q
     |||||||||||||| |||||||||||||||||||||| ||| |||| || |||||||||||| |||||||  ||||||||||  ||| |||| ||||||    
T  8559716 cgactccaaaaatgcttctgcaatctctcgcatctgtgtgagaatcatagctgatatttcttcggcaacaagatgcttttccttgcccctgtatttcaca 8559815  T
Q  204 agaattgtcggtttgtcatt 223  Q
    || |  || |||||||||||    
T  8559816 aggaccgttggtttgtcatt 8559835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8538316 - 8538493
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| || ||||||||  |||| |||||||| ||||||||||  ||||||||||| |||||||||||||| |||||||||||||| || ||    
T  8538316 tccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattgaaataagcaggtactgtaatcactgcatttttgac 8538415  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtg 178  Q
    |||||||||||||||| | || || | ||| ||||||| || ||||| || || ||||||||||||||||| ||||||    
T  8538416 aggtgactccaaaaatacttcagcgaactcccgcatctttgtgaggaccatagctgatatttcttcagcaaaaaagtg 8538493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 7877621 - 7877429
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| || || |||| | |||| |||||||| |||||| ||| ||| |||||||| |||||||| || |||||||  ||||||||||| ||    
T  7877621 tccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgac 7877522  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcaccctt 193  Q
    |||||||||||||||   |||||||||||| ||||||| ||  |||||||  ||||||||||| || |||  ||||||||||||||| |||||    
T  7877521 aggtgactccaaaaacttctctgcaatctcgcgcatctttgtaaggatcatggatgatatttcctcggcacaaaagtgcttttcctcgccctt 7877429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 29581697 - 29581525
Alignment:
Q  33 gcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctc 132  Q
    |||||||| |||||| |||  || |||||||| ||||||||||| || ||||||||||||||||| |||||  | |||||||||  ||||||||| ||      
T  29581697 gcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaatcactgcattctttacaggcaattccaaaaatttctctgcaatatcat 29581598  T
Q  133 gcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaag 205  Q
    |||||| ||||||||||| |||||||||||| |||||||||||   ||| || ||||||||||| || |||||    
T  29581597 gcatctttgagaggatcatagatgatatttcctcagcaacaaacctcttctcttcacccttgtacttaacaag 29581525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8602254 - 8602446
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| |||||||||||  |||| |||||||| |||||| |||  || ||||||||||||||||| || |||||||  ||||||||||| ||    
T  8602254 tccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttgac 8602353  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcaccctt 193  Q
    ||||||||||| |||   ||||||||| || ||||||| ||  |||| ||  ||||| ||||| ||||||   |||||||||||| |||||||    
T  8602354 aggtgactccagaaacttctctgcaatttcacgcatctttgtaaggaccattgatgagatttcctcagcacagaagtgcttttccccaccctt 8602446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 29577525 - 29577382
Alignment:
Q  33 gcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctc 132  Q
    |||||||| |||||| |||  || |||||||| |||||||| || || || |||||||||||||| || ||| |||||||||||  ||||||||||||      
T  29577525 gcatctttggtggcttttcgctgagaatcattgaaataagctggcactgtgatcactgcattctttacgggtaactccaaaaatttctctgcaatctcct 29577426  T
Q  133 gcatctgtgagaggatcacagatgatatttcttcagcaacaaag 176  Q
    |||||| ||||||||||| ||| |||||||| ||||||||||||    
T  29577425 gcatctttgagaggatcatagacgatatttcctcagcaacaaag 29577382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 8636175 - 8636010
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    |||||||| |||||||| || |||||||| ||||||||||| |||| ||| |||| | ||||||| |||||||||||||||| ||  |||| || ||| |    
T  8636175 gaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaatctctcgcatctttgtcaggaccatagacg 8636076  T
Q  157 atatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttgtcat 222  Q
    ||||||| |||| || ||  |||||||  ||||||||||| ||||||| |||  | ||||||||||    
T  8636075 atatttcctcaggaaaaagttgcttttgttcacccttgtatttcacaacaatcatgggtttgtcat 8636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 8610224 - 8610383
Alignment:
Q  28 cacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaat 127  Q
    |||| |||||||| |||||| | |  || |||||||||||||||||||| ||||| ||||||||||  |||||   |||||||||||||  ||| || ||    
T  8610224 caccagcatcttttgtggctttccgctgagaatcattaaaataagcaggcacagtgatcactgcatctttaacctttgactccaaaaatttctcggctat 8610323  T
Q  128 ctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctc 187  Q
    ||||  ||| | ||  ||||||| |||||| ||||| || ||||||||||||||||||||    
T  8610324 ctctttcatttttgcaaggatcatagatgaaatttcctccgcaacaaagtgcttttcctc 8610383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 8590974 - 8591113
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    ||||||||||||||||| || |||||||  ||||||||||| |||||||||||||||||    || |||||||||||||||| || ||| | ||  ||||    
T  8590974 gaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgactccaaaaacttttcagcaatctctcgcatctttgtgagaaccatggatg 8591073  T
Q  157 atatttcttcagcaacaaag-tgcttttcctcacccttgta 196  Q
    | ||||| || || ||||||  |||||||||||||||||||    
T  8591074 agatttcctccgc-acaaagacgcttttcctcacccttgta 8591113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 8382764 - 8382572
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| || ||||||||  |||| |||||||| |||||| | | ||| |||||||| ||||| ||||| || ||||  ||| ||||||  |     
T  8382764 tccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaactacattctcgat 8382665  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcaccctt 193  Q
    |||||||||||||||   |||||||||||| ||||||| |  ||||| || ||| || ||||| || |||  || ||| ||||||||||||||    
T  8382664 aggtgactccaaaaaattctctgcaatctcacgcatctttttgaggaccatagaggagatttcctcggcacaaaggtgtttttcctcaccctt 8382572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 10494262 - 10494067
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    |||| |||||||| || ||||||||  |||| |||||  |||| ||  ||| ||| ||||| || || ||||| || |||||||  || |||||||| ||    
T  10494262 tccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgac 10494163  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgta 196  Q
     |||||| ||||| |||||||||||| ||||||||||| |   |||| || |||||||||||| || |||  ||||||||| || | |||||||||    
T  10494162 tggtgaccccaaatatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgta 10494067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 13333288 - 13333151
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    |||||||| || ||||| || |||||||  || |||||||| || |||||| ||| | |||||||||||| ||||||||||| ||  |||| || |||||    
T  13333288 gaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaacctctcgcatctttgtaaggaccatagatg 13333189  T
Q  157 atatttcttcagcaacaaagtgcttttcctcacccttg 194  Q
    ||||||| || |||  ||||||||| || | |||||||    
T  13333188 atatttcctcggcacaaaagtgcttctcttgacccttg 13333151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27830763 - 27830626
Alignment:
Q  1 tccgcatgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaac 100  Q
    ||||||| ||||| || ||||||||  |||| | ||||  ||||||| ||| ||| || ||||| |||||||| || || || || ||||||||||||||    
T  27830763 tccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagagtcattgaaataagctggcacggttattactgcattcttaac 27830664  T
Q  101 aggtgactccaaaaatgcctctgcaatctctcgcatct 138  Q
     ||||| | |||| ||||||| || |||||||||||||    
T  27830663 cggtgattgcaaatatgcctccgcgatctctcgcatct 27830626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 8647189 - 8647379
Alignment:
Q  33 gcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctc 132  Q
    |||||| |||||||| |||  ||  ||||||| || || ||||| |||||||  ||||||||||| ||||| |||   ||| ||  |||||||| |||||    
T  8647189 gcatctatagtggcttttcgctgataatcattgaagtatgcaggcacagtaacaactgcattctttacaggggacattaaatatttctctgcaacctctc 8647288  T
Q  133 gcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttgtcatt 223  Q
    |||||| || ||||||||  ||||||||||| ||||||  | |  |||| || ||||||||||| || |||| |||  | |||||||||||    
T  8647289 gcatctttgtgaggatcatcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcatt 8647379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 6789800 - 6789885
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcatt 94  Q
    ||||| |||||||||||  |||| ||||||  ||||||| | | ||| |||||||| ||||||||||| |||||||| ||||||||    
T  6789800 acattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 8640316 - 8640212
Alignment:
Q  119 ctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttg 218  Q
    |||||||| |||||||||||  || ||||||| |||||||||||| || |||  |||  |||| || ||||||||||| || |||| ||| || ||||||    
T  8640316 ctctgcaacctctcgcatcttcgaaaggatcatagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatcgtgggtttg 8640217  T
Q  219 tcatt 223  Q
    |||||    
T  8640216 tcatt 8640212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 8585538 - 8585425
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    |||||||| ||||||||||| ||||| |  |||||||| | ||||||||| | |||| ||| |||||||||||    ||| | || |||||| | |||||    
T  8585538 gaatcattgaaataagcaggcacagtcacaactgcattttgaacaggtgatttcaaatatgtctctgcaatcttcttcatgtttgtgaggatgatagatg 8585439  T
Q  157 atatttcttcagca 170  Q
    ||||||| ||||||    
T  8585438 atatttcctcagca 8585425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 12528792 - 12529006
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    ||||| || ||||||||  |||| ||||| || ||||||| ||  || |||||||| ||||| || || || ||||||||||||||||||||||||||||    
T  12528792 acattgaggccagcaatgacaccagcatccttggtggctcgtcgctgcgaatcattgaaatacgctggcaccgtaatcactgcattcttaacaggtgact 12528891  T
Q  109 ccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaat 208  Q
    | | |||||| ||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||| | |||||  || |||||||||||||| ||    
T  12528892 caagaaatgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttcccattgtagttcacaaggat 12528991  T
Q  209 tgtcggtttgtcatt 223  Q
      |||||||||||||    
T  12528992 cttcggtttgtcatt 12529006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 43745184 - 43745292
Alignment:
Q  58 aatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatga 157  Q
    ||||||| |||||||| || |||||||  ||||||||||| |||||  | | |||||||| |||||||||||| ||||||| ||  || |||| ||||||    
T  43745184 aatcattgaaataagccggcacagtaacaactgcattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttgttagaatcatagatga 43745283  T
Q  158 tatttcttc 166  Q
     ||||||||    
T  43745284 gatttcttc 43745292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 28220239 - 28220368
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    |||||||||||||||||   |||||||||| | |||||| | |  ||  ||||||| ||||||||||| |||||||| ||||||||||| |||||  | |    
T  28220239 acatttagaccagcaatggtacctgcatctatggtggctttccgctgataatcattgaaataagcaggcacagtaataactgcattcttgacaggaaatt 28220338  T
Q  109 ccaaaaatgcctctgcaatctctcgcatct 138  Q
    ||||||| |||||||||||||| |||||||    
T  28220339 ccaaaaaggcctctgcaatctcacgcatct 28220368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 42555755 - 42555667
Alignment:
Q  78 acagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttc 166  Q
    |||||||  ||||||||||| |||||    ||||||||||||||||||||||  ||||||| ||  || |||| |||||| ||||||||    
T  42555755 acagtaacaactgcattcttgacaggcatttccaaaaatgcctctgcaatcttgcgcatctttgttagaatcatagatgagatttcttc 42555667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 35132743 - 35132921
Alignment:
Q  16 gaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaa 115  Q
    ||||||||||  |||| |||||| |||||||| ||| ||| |||||| ||||||||||||| |||||||  |||||||||||||||| ||| || ||| |    
T  35132743 gaccagcaatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacagttgattctaaata 35132842  T
Q  116 tgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgta 196  Q
    |||  ||||||| |||||||||| || ||| | ||  ||||||| |||||| |||   |  |||||||||||| |||||||    
T  35132843 tgc--ctgcaatttctcgcatctttgtgagtaccatggatgatacttcttccgcatagagttgcttttcctcatccttgta 35132921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 30775540 - 30775663
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    ||||| |||||||||||  |||| |||||  |||||||| |||  |||| |||||| ||||||||||| ||||| || |||||||| ||||| || || |    
T  30775540 acattaagaccagcaatggcaccagcatccatagtggcttttcgctgtgcatcattgaaataagcaggcacagtgataactgcatttttaactggggatt 30775639  T
Q  109 ccaaaaatgcctctgcaatctctc 132  Q
    ||||| |   ||||||||||||||    
T  30775640 ccaaatacatctctgcaatctctc 30775663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 15595329 - 15595541
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    ||||| || ||||||||  ||||||||||| |||||||| ||| ||| |||||||| | ||||||||| || ||||  |||||||| || || || ||||    
T  15595329 acattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaactgcattgtttacgggagact 15595428  T
Q  109 ccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaat 208  Q
      ||||||  |||||||| ||||||||||| |  ||| |||| ||| |||||||| ||||||  |||| ||||||| | ||||||||| || |||| |||    
T  15595429 --aaaaatttctctgcaacctctcgcatctttttgagaatcatagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataat 15595526  T
Q  209 tgtcggtttgtcatt 223  Q
      | |||||||||||    
T  15595527 catgggtttgtcatt 15595541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 34466625 - 34466512
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    |||||||||||||||||||| || || || |||||||||||||  ||||| |||||| || |||||||| | || ||||||| ||| ||||||| |||||    
T  34466625 gaatcattaaaataagcaggcacggtgataactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaaggatcatagatg 34466526  T
Q  157 atatttcttcagca 170  Q
    | ||||| ||||||    
T  34466525 agatttcctcagca 34466512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 7542514 - 7542675
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    ||||| || ||||||||  |||| |||||| |||||||| ||| ||| ||||||||||||||||||||||||||||  ||||||||| | |||| ||  |    
T  7542514 acattgaggccagcaatggcacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacagttgttt 7542613  T
Q  109 ccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagca 170  Q
    | ||| | | ||| ||||| |||||||||| || ||| | || ||||||||  |||||||||    
T  7542614 ctaaatacgactcagcaatttctcgcatctttgtgagtaccatagatgatacctcttcagca 7542675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 12258436 - 12258332
Alignment:
Q  34 catctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcg 133  Q
    ||||| |||||||| | | |||||||||| ||||||| ||||| |||||||  |||||||||||||| ||||| || ||| ||||||| ||||| |||||    
T  12258436 catctatagtggctttcctttgtgaatcactaaaatatgcaggcacagtaacaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcg 12258337  T
Q  134 catct 138  Q
    |||||    
T  12258336 catct 12258332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 16657400 - 16657236
Alignment:
Q  6 atgacatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtg 105  Q
    |||||||| || ||||| ||  |||| |||||| | |||||| |||  || |||||||| || ||||| || |||||||  || |||||||| ||||| |    
T  16657400 atgacattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacaggcg 16657301  T
Q  106 actccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagca 170  Q
    |||||| ||||||||| ||||  |||||||||| ||  ||||||| |||||||||||| ||||||    
T  16657300 actccataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagca 16657236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 14703727 - 14703825
Alignment:
Q  40 tagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatct 138  Q
    |||||||| ||| ||| |||||| ||||||||||||| || ||||  |||||||||||||||| |||||| ||| ||| ||| ||||| ||||||||||    
T  14703727 tagtggcttttctttgagaatcactaaaataagcaggcaccgtaacaactgcattcttaacagttgactctaaatatgtctcagcaatttctcgcatct 14703825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 12245238 - 12245125
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatg 156  Q
    |||||| |||||||||||||||||||||  || |||||||| || ||||| || ||| ||||||| ||||| |||||||||| ||  || | || |||||    
T  12245238 gaatcactaaaataagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaatttctcgcatctttgttagtaccatagatg 12245139  T
Q  157 atatttcttcagca 170  Q
    ||| ||||||||||    
T  12245138 atacttcttcagca 12245125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 12234977 - 12235134
Alignment:
Q  9 acatttagaccagcaatttcacctgcatctttagtggctcttcattgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgact 108  Q
    ||||| || ||||||||  |||| |||||| |||| ||| ||| ||| |||||||| ||||||||||| || ||||  |||||||||||||| ||  | |    
T  12234977 acattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactggaaatt 12235076  T
Q  109 ccaaaaatgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttc 166  Q
      ||| ||||||| || || |||||||||| || ||| | || |||||||| ||||||    
T  12235077 gtaaatatgcctcagcgatttctcgcatctttgtgagtaccatagatgatacttcttc 12235134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 16661824 - 16661755
Alignment:
Q  57 gaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaatgcctctgcaa 126  Q
    ||||| |||||||||||||| ||||| |  |||||||| ||||| ||||| |||||| | ||||||||||    
T  16661824 gaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaa 16661755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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